Simon Rogers

发表

Rapid Development of Improved Data-Dependent Acquisition Strategies

Vinny Davies, Joe Wandy, Stefan Weidt, 2020, bioRxiv.

Universal MS/MS Visualization and Retrieval with the Metabolomics Spectrum Resolver Web Service

Wout Bittremieux, Simon Rogers, Emma L. Schymanski, 2020 .

Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra.

Lars Ridder, Joe Wandy, Simon Rogers, 2019, Faraday discussions.

Autonomous Clothes Manipulation Using a Hierarchical Vision Architecture

Simon Rogers, Li Sun, Gerardo Aragon-Camarasa, 2018, IEEE Access.

Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets

Rainer Breitling, Joe Wandy, Simon Rogers, 2015, Bioinform..

Parameter Inference in Differential Equation Models of Biopathways Using Time Warped Gradient Matching

Dirk Husmeier, Maurizio Filippone, Simon Rogers, 2016, CIBB.

Semi-parametric analysis of multi-rater data

Simon Rogers, Mark A. Girolami, Tamara Polajnar, 2010, Stat. Comput..

EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture1[CC-BY]

Simon Rogers, Guillaume Lobet, Zaigham Shahzad, 2018, Plant Physiology.

MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools

Joe Wandy, Simon Rogers, Pieter C. Dorrestein, 2019 .

Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions

Juho Rousu, Justin J. J. van der Hooft, Simon Rogers, 2020, bioRxiv.

A Bayesian regression approach to the inference of regulatory networks from gene expression data

Simon Rogers, Mark A. Girolami, M. Girolami, 2005, Bioinform..

Computational inference of biopathway dynamics and structures

Dirk Husmeier, Maurizio Filippone, Simon Rogers, 2017 .

Single-shot clothing category recognition in free-configurations with application to autonomous clothes sorting

J. Paul Siebert, Simon Rogers, Rustam Stolkin, 2017, 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS).

28 frames later: predicting screen touches from back-of-device grip changes

Simon Rogers, Roderick Murray-Smith, Stephen Hughes, 2014, CHI.

Detecting Missing Content Queries in an SMS-Based HIV/AIDS FAQ Retrieval System

Iadh Ounis, Simon Rogers, Edwin Thuma, 2014, ECIR.

Uncertain text entry on mobile devices

Per Ola Kristensson, Simon Rogers, Henning Pohl, 2014, CHI.

Probabilistic assignment of formulas to mass peaks in metabolomics experiments

Simon Rogers, Mark A. Girolami, Rainer Breitling, 2009, Bioinform..

Fast inference in nonlinear dynamical systems using gradient matching

Dirk Husmeier, Maurizio Filippone, Simon Rogers, 2016, ICML 2016.

Machine learning techniques for microarray analysis.

Simon Rogers, 2004 .

A Precise Method for Cloth Configuration Parsing Applied to Single-Arm Flattening

Simon Rogers, Paul Siebert, Aamir Khan, 2016 .

Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry

Joe Wandy, Simon Rogers, Michael P. Barrett, 2017, Bioinform..

Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening

Li Sun, J. Paul Siebert, Simon Rogers, 2015, 2015 IEEE International Conference on Robotics and Automation (ICRA).

Robot Vision Architecture for Autonomous Clothes Manipulation pdf

Li Sun, J. Paul Siebert, Simon Rogers, 2016, ArXiv.

The latent process decomposition of cDNA microarray data sets

Colin Campbell, Rainer Breitling, Simon Rogers, 2005, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra

Lars Ridder, Joe Wandy, Simon Rogers, 2018, bioRxiv.

Investigating the Disagreement Between Clinicians’ Ratings of Patients in ICUs

John Kinsella, Simon Rogers, Derek H. Sleeman, 2013, IEEE Journal of Biomedical and Health Informatics.

User-specific touch models in a cross-device context

Daniel Buschek, Simon Rogers, Roderick Murray-Smith, 2013, MobileHCI '13.

Statistical inference in mechanistic models: time warping for improved gradient matching

Dirk Husmeier, Maurizio Filippone, Simon Rogers, 2018, Comput. Stat..

Technical Report An Evaluation of Gaussian Processes for Sentence Classication and Protein Interaction Detection

Mark Girolami, Simon Rogers, Tamara Polajnar, 2008 .

In-silico Optimisation of Mass Spectrometry Fragmentation Strategies in Metabolomics

Joe Wandy, Stefan Weidt, Simon Rogers, 2019, bioRxiv.

Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors

Mark Girolami, Simon Rogers, M. Girolami, 2006, Neural Computation.

Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation

Simon Rogers, Mark A. Girolami, Tamara Polajnar, 2011, Int. J. Data Min. Bioinform..

Sparse selection of training data for touch correction systems

Daniel Buschek, Simon Rogers, Daryl Weir, 2013, MobileHCI '13.

Recognising the clothing categories from free-configuration using Gaussian-Process-based interactive perception

J. Paul Siebert, Simon Rogers, Li Sun, 2016, 2016 IEEE International Conference on Robotics and Automation (ICRA).

HDP-Align: Hierarchical Dirichlet Process Clustering for Multiple Peak Alignment of Liquid Chromatography Mass Spectrometry Data

Joe Wandy, Simon Rogers, Rónán Daly, 2016, bioRxiv.

A user-specific machine learning approach for improving touch accuracy on mobile devices

Markus Löchtefeld, Simon Rogers, Roderick Murray-Smith, 2012, UIST '12.

Bayesian model-based inference of transcription factor activity

Raya Khanin, Simon Rogers, Mark A. Girolami, 2007, BMC Bioinformatics.

A Heuristic-Based Approach for Flattening Wrinkled Clothes

J. Paul Siebert, W. Paul Cockshott, Simon Rogers, 2013, TAROS.

Fast Parameter Inference in Nonlinear Dynamical Systems using Iterative Gradient Matching

Dirk Husmeier, Maurizio Filippone, Simon Rogers, 2016, ICML.

ODE parameter inference using adaptive gradient matching with Gaussian processes

Dirk Husmeier, Maurizio Filippone, Simon Rogers, 2013, AISTATS.

PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data

Joe Wandy, Simon Rogers, Michael P. Barrett, 2017, Bioinform..

FingerCloud: uncertainty and autonomy handover incapacitive sensing

Simon Rogers, Roderick Murray-Smith, Craig D. Stewart, 2010, CHI.

Classification of Protein Interaction Sentences via Gaussian Processes

Simon Rogers, Mark A. Girolami, Tamara Polajnar, 2009, PRIB.

Infinite factorization of multiple non-parametric views

Samuel Kaski, Simon Rogers, Mark A. Girolami, 2010, Machine Learning.

Stronger findings from mass spectral data through multi-peak modeling

Samuel Kaski, Simon Rogers, Tommi Suvitaival, 2014, BMC Bioinformatics.

Exploiting Query Logs and Field-Based Models to Address Term Mismatch in an HIV/AIDS FAQ Retrieval System

Iadh Ounis, Simon Rogers, Edwin Thuma, 2013, NLDB.

Multi-class Semi-supervised Learning with the e-truncated Multinomial Probit Gaussian Process

Simon Rogers, Mark A. Girolami, 2007, Gaussian Processes in Practice.

Two-level infinite mixture for multi-domain data

Mark Girolami, Simon Rogers, Arto Klami, 2008 .

Detecting Swipe Errors on Touchscreens using Grip Modulation

John Williamson, Simon Rogers, Mohammad Faizuddin Mohd Noor, 2016, CHI.

In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics

Vinny Davies, Joe Wandy, Stefan Weidt, 2019, Metabolites.

Modelling and correcting for the impact of the gait cycle on touch screen typing accuracy

Josip Musić, Simon Rogers, Roderick Murray-Smith, 2016, mUX: The Journal of Mobile User Experience.

The Latent Process Decomposition of cDNA Microarray Data Sets

Colin Campbell, Mark Girolami, Rainer Breitling, 2005, TCBB.

Disease Classification from Capillary Electrophoresis: Mass Spectrometry

Simon Rogers, Mark A. Girolami, Harald Mischak, 2005, ICAPR.

MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools

Joe Wandy, Simon Rogers, Mingxun Wang, 2019, bioRxiv.

Hierarchic Bayesian models for kernel learning

Simon Rogers, Mark A. Girolami, M. Girolami, 2005, ICML.

Decomposing metabolite set activity levels with PALS

Justin J.J. van der Hooft, Joe Wandy, Rónán Daly, 2020, bioRxiv.

A First Course in Machine Learning

Simon Rogers, Mark A. Girolami, M. Girolami, 2011, Chapman and Hall / CRC machine learning and pattern recognition series.

ShinyKGode: an interactive application for ODE parameter inference using gradient matching

Dirk Husmeier, Joe Wandy, Simon Rogers, 2018, Bioinform..

Evaluating bad query abandonment in an iterative SMS-based FAQ retrieval system

Iadh Ounis, Simon Rogers, Edwin Thuma, 2013, OAIR.

A First Course in Machine Learning, Second Edition

Mark Girolami, Simon Rogers, 2016 .

Information Graphics: Space

Simon Rogers, Peter Grundy, 2014 .

Minimally-destructive atmospheric ionisation mass spectrometry authenticates authorship of historical manuscripts

Simon Rogers, James Newton, Gerard Carruthers, 2018, Scientific Reports.

Estimating Dataset Size Requirements for Classifying DNA Microarray Data

Sayan Mukherjee, Jill P. Mesirov, Colin Campbell, 2003, J. Comput. Biol..

MetAssign: probabilistic annotation of metabolites from LC–MS data using a Bayesian clustering approach

Rainer Breitling, Joe Wandy, Simon Rogers, 2014, Bioinform..

AnglePose: robust, precise capacitive touch tracking via 3d orientation estimation

Simon Rogers, Roderick Murray-Smith, Craig D. Stewart, 2011, CHI.

Pre-interaction identification by dynamic grip classification

John Williamson, Simon Rogers, Mohammad Faizuddin Mohd Noor, 2017, IMCOM.

Stronger findings for metabolomics through Bayesian modeling of multiple peaks and compound correlations

Samuel Kaski, Simon Rogers, Tommi Suvitaival, 2014, Bioinform..

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models

Tao Liu, Simon Rogers, Mark A. Girolami, 2008, Bioinform..

Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions

Joe Wandy, Simon Rogers, Justin J J van der Hooft, 2021, PLoS Comput. Biol..

Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics

Joe Wandy, Simon Rogers, Michael P. Barrett, 2017, Analytical chemistry.

Prognostic classification of relapsing favorable histology Wilms tumor using cDNA microarray expression profiling and support vector machines

Simon Rogers, Colin Campbell, Javed Khan, 2004, Genes, chromosomes & cancer.

Topic modeling for untargeted substructure exploration in metabolomics

Joe Wandy, Simon Rogers, Michael P Barrett, 2016, Proceedings of the National Academy of Sciences.

Mixture model clustering for peak filtering in metabolomics

Rainer Breitling, Simon Rogers, Rónán Daly, 2012 .

Class Prediction with Microarray Datasets

Simon Rogers, Colin Campbell, S. Rogers, 2004 .

Linking biosynthetic and chemical space to accelerate microbial secondary metabolite discovery

Simon Rogers, Katherine R. Duncan, Sylvia Soldatou, 2019, FEMS microbiology letters.

Model based identification of transcription factor activity from microarray data

Mark Girolami, Simon Rogers, M. Girolami, 2006 .

Integrated Probabilistic Annotation (IPA): A Bayesian-based annotation method for metabolomic profiles integrating biochemical connections, isotope patterns and adduct relationships.

Rainer Breitling, Simon Rogers, Eriko Takano, 2019, Analytical chemistry.

Bayesian Approaches for Mass Spectrometry‐Based Metabolomics

Rainer Breitling, Simon Rogers, Michael P. Barrett, 2011 .

Expression profiling targeting chromosomes for tumor classification and prediction of clinical behavior

Simon Rogers, Colin Campbell, Rubin Wang, 2003, Genes, chromosomes & cancer.