Thomas Bonfert

Prediction of Poly(A) Sites by Poly(A) Read Mapping

Thomas Bonfert, Caroline C. Friedel, C. Friedel, 2017, PloS one.

A context-based approach to identify the most likely mapping for RNA-Seq experiments

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2012 .

A context-based approach to identify the most likely mapping for RNA-seq experiments

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2012, BMC Bioinformatics.

ContextMap 2: fast and accurate context-based RNA-seq mapping

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2015, BMC Bioinformatics.

p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses*

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2015, Molecular & Cellular Proteomics.

Mining RNA–Seq Data for Infections and Contaminations

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2013, PloS one.

Widespread disruption of host transcription termination in HSV-1 infection

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2015, Nature Communications.

Real-time Transcriptional Profiling of Cellular and Viral Gene Expression during Lytic Cytomegalovirus Infection

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2012, PLoS pathogens.