Caroline C. Friedel

发表

Prediction of Poly(A) Sites by Poly(A) Read Mapping

Thomas Bonfert, Caroline C. Friedel, C. Friedel, 2017, PloS one.

Reliable gene signatures for microarray classification: assessment of stability and performance

Caroline C. Friedel, Ralf Zimmer, Robert Küffner, 2006, Bioinform..

Analysis of high throughput data - protein protein interactions, protein complexes and RNA half life

Caroline C. Friedel, C. Friedel, 2009, Ausgezeichnete Informatikdissertationen.

Bioinformatics advances biology and medicine by turning big data troves into knowledge

Volker Heun, Burkhard Rost, Caroline C. Friedel, 2017, Informatik-Spektrum.

Toward the complete interactome

Caroline C. Friedel, Ralf Zimmer, 2006, Nature Biotechnology.

Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast

Caroline C. Friedel, Ralf Zimmer, Jan Krumsiek, 2008, RECOMB.

FERN – a Java framework for stochastic simulation and evaluation of reaction networks

Caroline C. Friedel, Ralf Zimmer, Florian Erhard, 2008, BMC Bioinformatics.

ProCope - protein complex prediction and evaluation

Caroline C. Friedel, Ralf Zimmer, Jan Krumsiek, 2008, Bioinform..

Inferring topology from clustering coefficients in protein-protein interaction networks

Caroline C. Friedel, Ralf Zimmer, R. Zimmer, 2006, BMC Bioinformatics.

Detection and correction of probe-level artefacts on microarrays

Caroline C. Friedel, Ralf Zimmer, Tobias Petri, 2012, BMC Bioinformatics.

Support vector machines for separation of mixed plant?Cpathogen EST collections based on codon usage

Igor V. Tetko, Caroline C. Friedel, Katharina Jahn, 2005, Bioinform..

A context-based approach to identify the most likely mapping for RNA-Seq experiments

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2012 .

Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast

Caroline C. Friedel, Ralf Zimmer, Jan Krumsiek, 2008, J. Comput. Biol..

Influence of degree correlations on network structure and stability in protein-protein interaction networks

Caroline C. Friedel, Ralf Zimmer, R. Zimmer, 2007, BMC Bioinformatics.

A context-based approach to identify the most likely mapping for RNA-seq experiments

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2012, BMC Bioinformatics.

Watchdog – a workflow management system for the distributed analysis of large-scale experimental data

Caroline C. Friedel, Michael Kluge, Michael Kluge, 2018, BMC Bioinformatics.

HALO - a Java framework for precise transcript half-life determination

Caroline C. Friedel, Ralf Zimmer, Lars Dölken, 2010, Bioinform..

Algorithmische Systembiologie mit Petrinetzen – Von qualitativen zu quantitativen Systemmodellen

Caroline C. Friedel, Ralf Zimmer, Fabian Birzele, 2009, Informatik-Spektrum.

Systems biology

Caroline C. Friedel, Ralf Zimmer, Terumi Hayashi, 2004, Journal of Medical Ultrasonics.

FERN – Stochastic Simulation and Evaluation of Reaction Networks

Caroline C. Friedel, Ralf Zimmer, Florian Erhard, 2010 .

ContextMap 2: fast and accurate context-based RNA-seq mapping

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2015, BMC Bioinformatics.

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life

Caroline C. Friedel, Ralf Zimmer, Lars Dölken, 2009, Nucleic acids research.

The SARS-Coronavirus-Host Interactome: Identification of Cyclophilins as Target for Pan-Coronavirus Inhibitors

Christian Drosten, Caroline C. Friedel, Ralf Zimmer, 2011, PLoS pathogens.

p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses*

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2015, Molecular & Cellular Proteomics.

Cost Curves for Abstaining Classifiers

Ulrich Rückert, Caroline C. Friedel, U. Rückert, 2006 .

Mining RNA–Seq Data for Infections and Contaminations

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2013, PloS one.

Widespread disruption of host transcription termination in HSV-1 infection

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2015, Nature Communications.

Analysis of Intraviral Protein-Protein Interactions of the SARS Coronavirus ORFeome

Caroline C. Friedel, Ralph Baric, Ralf Zimmer, 2007, PloS one.

Real-time Transcriptional Profiling of Cellular and Viral Gene Expression during Lytic Cytomegalovirus Infection

Thomas Bonfert, Caroline C. Friedel, Ralf Zimmer, 2012, PLoS pathogens.

A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq

Caroline C. Friedel, Robert Lindner, C. Friedel, 2012, PloS one.

RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway

Nils Blüthgen, Rolf Backofen, Caroline C. Friedel, 2015, Nature Communications.