M. Halstead

发表

A comprehensive prediction of transcript isoforms in 19 chicken tissues by Oxford Nanopore long-read sequencing

Hans H. Cheng, Huaijun Zhou, A. Islas-Trejo, 2022, bioRxiv.

Pig genome functional annotation enhances biological interpretations of complex traits and comparative epigenomics

M. Lund, C. Ernst, M. Fredholm, 2021 .

Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage

Huaijun Zhou, A. Islas-Trejo, P. Ross, 2020, bioRxiv.

Prediction of transcript isoforms in 19 chicken tissues by Oxford Nanopore long-read sequencing

Hans H. Cheng, Huaijun Zhou, A. Islas-Trejo, 2022, Frontiers in Genetics.

Transcriptome annotation of 17 porcine tissues using nanopore sequencing technology.

C. Ernst, Huaijun Zhou, A. Islas-Trejo, 2022, Animal genetics.

Salmonella enterica Serovars Enteritidis Infection Alters the Indigenous Microbiota Diversity in Young Layer Chicks

Huaijun Zhou, P. Saelao, E. Maga, 2015, Front. Vet. Sci..

A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues

Alison L. Van Eenennaam, I. Korf, C. Ernst, 2020, bioRxiv.

Simplification of culture conditions and feeder-free expansion of bovine embryonic stem cells

Jun Wu, P. Ross, Canbin Zheng, 2021, Scientific Reports.

Histone remodeling reflects conserved mechanisms of bovine and human preimplantation development

R. Schultz, P. Ross, A. Bonnet-Garnier, 2023, EMBO reports.

Pig genome functional annotation enhances the biological interpretation of complex traits and human disease

M. Lund, C. Ernst, M. Fredholm, 2021, Nature Communications.

Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research

Alison L. Van Eenennaam, Hans H. Cheng, P. Flicek, 2021, Nature Communications.

Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues

M. Delany, Huaijun Zhou, P. Saelao, 2020, Scientific Reports.

Chromatin remodeling in bovine embryos indicates species-specific regulation of genome activation

R. Schultz, P. Ross, Xin Ma, 2019, Nature Communications.

Transcript profiling of bovine embryos implicates specific transcription factors in the maternal-to-embryo transition

R. Schultz, C. Kern, J. Chitwood, 2019, Biology of Reproduction.

Transcriptome profiling of individual rhesus macaque oocytes and preimplantation embryos†

S. Meyers, J. Chitwood, P. Ross, 2017, Biology of Reproduction.

Large-Scale Multiplexing Permits Full-Length Transcriptome Annotation of 32 Bovine Tissues From a Single Nanopore Flow Cell

J. Medrano, Huaijun Zhou, A. Islas-Trejo, 2021, Frontiers in Genetics.

Profiling of open chromatin in developing pig (Sus scrofa) muscle to identify regulatory regions

Musa A. Hassan, A. Archibald, M. Johnsson, 2021, bioRxiv.

A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues

Alison L. Van Eenennaam, I. Korf, C. Ernst, 2020, BMC Genomics.

Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues

M. Delany, Huaijun Zhou, P. Saelao, 2020, Scientific Reports.

An atlas of regulatory elements in chicken: A resource for chicken genetics and genomics

Hans H. Cheng, M. Delany, Xiaoxiang Hu, 2023, Science advances.

bESCs from cloned embryos do not retain transcriptomic or epigenetic memory from somatic donor cells.

P. Ross, A. Mutto, M. Halstead, 2022, Reproduction.

Pig genome functional annotation enhances biological interpretations of complex traits and 1 comparative epigenomics 2

M. Lund, M. Fredholm, C. Tuggle, 2021 .