Robert L Moritz

发表

Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles)*

Richard D Smith, Mark Baker, John R Yates, 2011, Molecular & Cellular Proteomics.

DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics

Robert L Moritz, Mukul K Midha, David S Campbell, 2020, Nature Communications.

Processing Shotgun Proteomics Data on the Amazon Cloud with the Trans-Proteomic Pipeline*

Luis Mendoza, Eric W Deutsch, Robert L Moritz, 2014, Molecular & Cellular Proteomics.

Flexible and Fast Mapping of Peptides to a Proteome with ProteoMapper.

Luis Mendoza, Eric W Deutsch, Robert L Moritz, 2018, Journal of proteome research.

Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.

Karl Mechtler, Andrew R Jones, Christoph H Borchers, 2020, Structure.

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles).

Richard D Smith, Mark Baker, John R Yates, 2012, Journal of proteome research.

Kojak: efficient analysis of chemically cross-linked protein complexes.

Michael J MacCoss, Alex Zelter, Trisha N Davis, 2015, Journal of proteome research.

The Protein Information and Property Explorer 2: Gaggle‐like exploration of biological proteomic data within one webpage

Paul Shannon, Ruedi Aebersold, Hector Ramos, 2011, Proteomics.

PASSEL: The PeptideAtlas SRMexperiment library

Luis Mendoza, Ruedi Aebersold, Eric W Deutsch, 2012, Proteomics.

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.

Nuno Bandeira, Lydie Lane, Eric W Deutsch, 2019, Journal of proteome research.

Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project.

Magnus Palmblad, Nuno Bandeira, Bin Xia, 2020, Journal of proteome research.

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

Lennart Martens, Henning Hermjakob, Ruedi Aebersold, 2016, Journal of proteome research.

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)

Richard D Smith, John R Yates, Henning Hermjakob, 2011, Proteomics. Clinical applications.

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

Brett Larsen, Anne-Claude Gingras, Birgit Schilling, 2016, bioRxiv.

PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline.

Luis Mendoza, Eric W Deutsch, Mukul Kumar Midha, 2019, Journal of proteome research.

StPeter: Seamless Label-Free Quantification with the Trans-Proteomic Pipeline.

Luis Mendoza, Robert L Moritz, Michael R Hoopmann, 2018, Journal of proteome research.

Identification and Stoichiometry of Glycosylphosphatidylinositol-anchored Membrane Proteins of the Human Malaria Parasite Plasmodium falciparum*S

Terence P Speed, Robert L Moritz, Damjan Vukcevic, 2006, Molecular & Cellular Proteomics.

An open-source computational and data resource to analyze digital maps of immunopeptidomes

Alessandro Sette, Ruedi Aebersold, Lucia Espona, 2015, eLife.

Integrated Phosphoproteomics Analysis of a Signaling Network Governing Nutrient Response and Peroxisome Induction*

Alexey I Nesvizhskii, Alexander V Ratushny, John D Aitchison, 2010, Molecular & Cellular Proteomics.

The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis.

Ruedi Aebersold, Hannes L Röst, Stefan H E Kaufmann, 2013, Cell host & microbe.

The state of the human proteome in 2012 as viewed through PeptideAtlas.

Eric W Deutsch, Robert L Moritz, Michael R Hoopmann, 2013, Journal of proteome research.

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling

Massimiliano Bonomi, Michael J MacCoss, Daniel Jaschob, 2015, Nature Communications.

Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data-independent Acquisition Mass Spectrometry (MS) using SWATHProphet*

Andrew Keller, Robert L Moritz, Samuel L Bader, 2015, Molecular & Cellular Proteomics.

Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics

Eric W Deutsch, Robert L Moritz, David S Campbell, 2014, Current protocols in bioinformatics.

Parallel evolution of transcriptome architecture during genome reorganization.

Min Pan, Dan Tenenbaum, Sung Ho Yoon, 2011, Genome research.

Identification of DIABLO, a Mammalian Protein that Promotes Apoptosis by Binding to and Antagonizing IAP Proteins

Robert L Moritz, Richard J Simpson, Lisa M Connolly, 2000, Cell.

Role of the Plasmodium Export Element in Trafficking Parasite Proteins to the Infected Erythrocyte

Robert L Moritz, Richard J Simpson, R. Moritz, 2009, Traffic.

State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project.

Eric W Deutsch, Gilbert S Omenn, Robert L Moritz, 2014, Journal of proteome research.

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

Paul Wilmes, Thomas Sauter, Patrick May, 2015, npj Biofilms and Microbiomes.

An Open Data Format for Visualization and Analysis of Cross-Linked Mass Spectrometry Results

Luis Mendoza, Eric W Deutsch, Robert L Moritz, 2016, Journal of The American Society for Mass Spectrometry.

SRM targeted proteomics in search for biomarkers of HCV‐induced progression of fibrosis to cirrhosis in HALT‐C patients

Gilbert S Omenn, Robert L Moritz, Leroy Hood, 2012, Proteomics.

PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing

Robert L Moritz, Richard J Simpson, John M Cunningham, 2009, Nature Structural &Molecular Biology.

The 5300-year-old Helicobacter pylori genome of the Iceman

Thomas Rattei, Rudolf Grimm, Robert L Moritz, 2016, Science.

Glycocapture-assisted global quantitative proteomics (gagQP) reveals multiorgan responses in serum toxicoproteome.

Zhiyuan Hu, Andrew Keller, Robert L Moritz, 2013, Journal of proteome research.

Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics

Luis Mendoza, Eric W Deutsch, Robert L Moritz, 2015, Proteomics. Clinical applications.

Exosomes: proteomic insights and diagnostic potential

Robert L Moritz, Richard J Simpson, Suresh Mathivanan, 2009, Expert review of proteomics.

N-Glycoprotein SRMAtlas

Ruedi Aebersold, Bernd Wollscheid, Robert L Moritz, 2013, Molecular & Cellular Proteomics.

Proteogenomic analysis of the total and surface-exposed proteomes of Plasmodium vivax salivary gland sporozoites

Jetsumon Sattabongkot, Robert L Moritz, Kristian E. Swearingen, 2017, PLoS neglected tropical diseases.

Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.

Luis Mendoza, Pierre-Alain Binz, Eric W Deutsch, 2016, Journal of proteome research.

New and improved proteomics technologies for understanding complex biological systems: Addressing a grand challenge in the life sciences

Ruedi Aebersold, Laurie Locascio, Gilbert S Omenn, 2012, Proteomics.

A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry.

Luis Mendoza, Eric W Deutsch, Robert L Moritz, 2018, Journal of proteome research.

Reproducible Quantification of Cancer-Associated Proteins in Body Fluids Using Targeted Proteomics

Ruedi Aebersold, Eric W Deutsch, Hannes Röst, 2012, Science Translational Medicine.

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

Karl Mechtler, Michael J MacCoss, Jürgen Cox, 2019, Analytical chemistry.

Building ProteomeTools based on a complete synthetic human proteome

Mathias Wilhelm, Ruedi Aebersold, Stephan Aiche, 2017, Nature Methods.

A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen

Min Pan, Sung Ho Yoon, Robert L Moritz, 2013, Genome research.