M. Samaranayake

Enzymatic Methyl-seq: Next Generation Methylomes.

T. C. Evans, Matthew A. Campbell, Louise Williams, 2020, Journal of biomolecular techniques : JBT.

Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA

T. C. Evans, Matthew A. Campbell, Louise Williams, 2021, Genome research.

Transcription Coupled DNA Methylation Mediated By RNA Pol II and DNMT1

S. Jacobsen, S. Pradhan, H. Chin, 2014 .

Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells

S. Jacobsen, Jack Benner, S. Pradhan, 2009, Proceedings of the National Academy of Sciences.

EM-seq: Detection of DNA Methylation at Single Base Resolution from Picograms of DNA

T. C. Evans, Matthew A. Campbell, Louise Williams, 2019, bioRxiv.

Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations.

A. Bhagwat, Asad Ullah, A. Sohail, 2003, Nucleic acids research.

Transcriptional pausing and stalling causes multiple clustered mutations by human activation‐induced deaminase

A. Bhagwat, Chandrika Canugovi, M. Samaranayake, 2009, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Evaluation of molecular models for the affinity maturation of antibodies: roles of cytosine deamination by AID and DNA repair.

M. Carpenter, J. Bujnicki, A. Bhagwat, 2006, Chemical reviews.

Epigenetic mechanisms in mammals

S. Pradhan, J. K. Kim, M. Samaranayake, 2008, Cellular and Molecular Life Sciences.

Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

T. C. Evans, L. Ettwiller, L. Saleh, 2019, bioRxiv.

Structure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease

R. Roberts, Xiaodong Cheng, Xing Zhang, 2012, Nucleic acids research.

A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability

Xiaodong Cheng, S. Pradhan, J. Horton, 2011, Nature Structural &Molecular Biology.