Deborah A. Weighill

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Parallel Accelerated Vector Similarity Calculations for Genomics Applications pdf

Wayne Joubert, James Nance, Deborah A. Weighill, 2017, Parallel Comput..

3-way Networks: Application of Hypergraphs for Modelling Increased Complexity in Comparative Genomics

Deborah A. Weighill, Daniel A. Jacobson, 2015, PLoS Comput. Biol..

Parallel Accelerated Custom Correlation Coefficient Calculations for Genomics Applications pdf

Sharlee Climer, Wayne Joubert, James Nance, 2017, Parallel Comput..

Attacking the Opioid Epidemic: Determining the Epistatic and Pleiotropic Genetic Architectures for Chronic Pain and Opioid Addiction

David Kainer, Sharlee Climer, Wayne Joubert, 2018, SC18: International Conference for High Performance Computing, Networking, Storage and Analysis.

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence

João G. F. M. Gazolla, Deborah A. Weighill, Daniel A. Jacobson, 2019, Front. Plant Sci..

Gene Targeting in Disease Networks

Deborah A. Weighill, Marouen Ben Guebila, John Quackenbush, 2021, Frontiers in Genetics.

Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

Deborah A. Weighill, P. Hedley, D. Burra, 2014, BMC Genomics.

Network Metamodeling: Effect of Correlation Metric Choice on Phylogenomic and Transcriptomic Network Topology.

Deborah A. Weighill, Daniel A. Jacobson, D. Jacobson, 2017, Advances in biochemical engineering/biotechnology.

Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships

Deborah A. Weighill, Daniel A. Jacobson, T. Tschaplinski, 2019, Front. Genet..

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Deborah A. Weighill, Daniel A. Jacobson, J. A. Smith, 2017, Nature Communications.

Characterization of DWARF14 Genes in Populus

Deborah A. Weighill, Daniel A. Jacobson, Jun Yang, 2016, Scientific Reports.

Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype

Deborah A. Weighill, Daniel A. Jacobson, C. Schadt, 2019, Front. Microbiol..

Linking crop traits to transcriptome differences in a progeny population of tetraploid potato

Deborah A. Weighill, S. Kushwaha, D. Jacobson, 2020, BMC Plant Biology.

The Network Zoo: a multilingual package for the inference and analysis of biological networks

Deborah A. Weighill, Marouen Ben Guebila, D. DeMeo, 2022, bioRxiv.

Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

Deborah A. Weighill, Daniel A. Jacobson, Robert W. Sykes, 2018, bioRxiv.

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation

Deborah A. Weighill, Daniel A. Jacobson, J. Schmutz, 2019, Front. Genet..

Linking crop traits to transcriptome differences in a progeny population of tetraploid potato

Deborah A. Weighill, S. Kushwaha, D. Jacobson, 2019, BMC Plant Biology.

Exploring the topology of complex phylogenomic and transcriptomic networks

Deborah A. Weighill, 2014 .

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave

Deborah A. Weighill, Daniel A. Jacobson, T. Tschaplinski, 2016, Nature Plants.

Gene Regulatory Network Inference as Relaxed Graph Matching

John Quackenbush, Kimberly Glass, Deborah A. Weighill, 2020, bioRxiv.

Early fermentation volatile metabolite profile of non-Saccharomyces yeasts in red and white grape must: A targeted approach

Deborah A. Weighill, S. Carlin, U. Vrhovsek, 2015 .

Defining the genetic components of callus formation: A GWAS approach

Gerald A Tuskan, Wellington Muchero, Deborah A. Weighill, 2018, PloS one.

GRAND: a database of gene regulatory network models across human conditions

Deborah A. Weighill, Abhijeet R. Sonawane, Marouen Ben Guebila, 2021, bioRxiv.

Data Integration in Poplar: ‘Omics Layers and Integration Strategies

Gerald A. Tuskan, Deborah A. Weighill, Daniel A. Jacobson, 2019, Front. Genet..

Network and multi-scale signal analysis for the integration of large omic datasets: applications in Populus trichocarpa

Deborah A. Weighill, Deborah Ann Weighill, 2019 .

High Throughput Screening Technologies in Biomass Characterization

Stephen R. Decker, Anne E. Harman-Ware, Renee M. Happs, 2018, Front. Energy Res..

Pleiotropy Decomposition of 609 Populus Trichocarpa Genotypes

Deborah A. Weighill, Daniel A. Jacobson, T. Tschaplinski, 2016 .

Predicting genotype-specific gene regulatory networks

Deborah A. Weighill, Marouen Ben Guebila, John Quackenbush, 2021, bioRxiv.

An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks

Deborah A. Weighill, J. Quackenbush, M. Fagny, 2022, Nature Methods.

DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks

Deborah A. Weighill, Marouen Ben Guebila, H. U. Zacharias, 2021, Nucleic acids research.

Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses

Deborah A. Weighill, Daniel A. Jacobson, M. Podar, 2018, Applied and Environmental Microbiology.

A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a Populus ANGUSTIFOLIA Protein

Deborah A. Weighill, Daniel A. Jacobson, J. Schmutz, 2018, G3: Genes, Genomes, Genetics.

Network Modeling of Complex Data Sets.

Deborah Weighill, Piet Jones, Sharlee Climer, 2020, Methods in molecular biology.