Edward Susko

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Edward Susko (Draft Profile)

Edward Susko, 2013 .

Reproducing the manual annotation of multiple sequence alignments using a SVM classifier

Christian Blouin, Andrew J. Roger, Allan Lavell, 2009, Bioinform..

Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys

Andrew J. Roger, Edward Susko, E. Susko, 2004, Bioinform..

Statistical inference methods for gene expression arrays

Peter Ramm, Edward Susko, Robert Nadon, 2001, SPIE BiOS.

Using minimum bootstrap support for splits to construct confidence regions for trees

Edward Susko, E. Susko, 2006, Evolutionary bioinformatics online.

Looking for Darwin in Genomic Sequences: Validity and Success Depends on the Relationship Between Model and Data.

Edward Susko, Joseph P. Bielawski, Christopher T. Jones, 2019, Methods in molecular biology.

ModL: exploring and restoring regularity when testing for positive selection

Edward Susko, Joseph Mingrone, Joseph Bielawski, 2019, Bioinform..

A phylogenetic mixture model for the identification of functionally divergent protein residues

Andrew J. Roger, Edward Susko, Daniel Gaston, 2011, Bioinform..

Automatic recognition of regions of intrinsically poor multiple alignment using machine learning

Evangelos E. Milios, Christian Blouin, Andrew J. Roger, 2003, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003.

Weighted tests of homogeneity for testing the number of components in a mixture

Edward Susko, E. Susko, 2003, Comput. Stat. Data Anal..

Ancestral state reconstruction with large numbers of sequences and edge-length estimation

Lam Si Tung Ho, Edward Susko, E. Susko, 2021, Journal of Mathematical Biology.

Likelihood ratio tests with boundary constraints using data-dependent degrees of freedom

Edward Susko, 2013 .

Biases in Phylogenetic Estimation Can Be Caused by Random Sequence Segments

Andrew J. Roger, Edward Susko, E. Susko, 2005, Journal of Molecular Evolution.

Phenomenological Load on Model Parameters Can Lead to False Biological Conclusions

Edward Susko, Joseph P Bielawski, E. Susko, 2018, Molecular biology and evolution.

Rate-variation need not defeat phylogenetic inference through pairwise sequence comparisons.

Edward Susko, Jihua Wu, 2010, Journal of theoretical biology.

Testing congruence in phylogenomic analysis.

Edward Susko, E. Susko, A. Roger, 2008, Systematic biology.

Modelling prokaryote gene content

Andrew J. Roger, Edward Susko, Matthew Spencer, 2006, Evolutionary bioinformatics online.

An independent heterotachy model and its implications for phylogeny and divergence time estimation.

Edward Susko, Jihua Wu, E. Susko, 2008, Molecular phylogenetics and evolution.

On reduced amino acid alphabets for phylogenetic inference.

Edward Susko, E. Susko, A. Roger, 2007, Molecular biology and evolution.

An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.

Edward Susko, E. Susko, A. Roger, 2014, Molecular biology and evolution.

Smoothed Bootstrap Aggregation for Assessing Selection Pressure at Amino Acid Sites.

Edward Susko, Joseph Mingrone, Joseph Bielawski, 2016, Molecular biology and evolution.

Estimation of relaxation time distributions in magnetic resonance imaging

Robert Tibshirani, Edward Susko, Simon J. Graham, 2001 .

First-order correct bootstrap support adjustments for splits that allow hypothesis testing when using maximum likelihood estimation.

Edward Susko, 2010, Molecular biology and evolution.

Likelihood, parsimony, and heterogeneous evolution.

Edward Susko, Matthew Spencer, M. Spencer, 2005, Molecular biology and evolution.

On inconsistency of the neighbor-joining, least squares, and minimum evolution estimation when substitution processes are incorrectly modeled.

Edward Susko, Yuji Inagaki, Y. Inagaki, 2004, Molecular biology and evolution.

On the artefactual parasitic eubacteria clan in conditioned logdet phylogenies: heterotachy and ortholog identification artefacts as explanations

David Bryant, Edward Susko, Matthew Spencer, 2010, BMC Evolutionary Biology.

PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site-specific covarion pattern analysis

Edward Susko, E. Susko, A. Roger, 2009, BMC Evolutionary Biology.

Alignment errors strongly impact likelihood-based tests for comparing topologies.

Tal Pupko, Edward Susko, T. Pupko, 2014, Molecular biology and evolution.

Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies.

Edward Susko, Yuji Inagaki, Y. Inagaki, 2004, Molecular biology and evolution.

Shifting Balance on a Static Mutation-Selection Landscape: A Novel Scenario of Positive Selection.

Edward Susko, Joseph P Bielawski, E. Susko, 2016, Molecular biology and evolution.

Estimation of rates-across-sites distributions in phylogenetic substitution models.

Chris Field, Christian Blouin, Edward Susko, 2003, Systematic biology.

On the distributions of bootstrap support and posterior distributions for a star tree.

Edward Susko, E. Susko, 2008, Systematic biology.

Nuclear genetic codes with a different meaning of the UAG and the UAA codon

Andrew J. Roger, Edward Susko, Romain Derelle, 2017, BMC Biology.

Testing for covarion-like evolution in protein sequences.

Edward Susko, Matthew Spencer, M. Spencer, 2007, Molecular biology and evolution.