Michal J. Boniecki

发表

Rational engineering of sequence specificity in R.MwoI restriction endonuclease

J. Bujnicki, K. Skowronek, Boguslaw Kluge, 2012, Nucleic acids research.

TOUCHSTONE: A unified approach to protein structure prediction

Daisuke Kihara, Yang Zhang, Andrzej Kolinski, 2003, Proteins.

FRankenstein becomes a cyborg: The automatic recombination and realignment of fold recognition models in CASP6

Marcin Feder, Michal J Gajda, Jan Kosinski, 2005, Proteins.

Template-Based and Template-Free Modeling of RNA 3D Structure: Inspirations from Protein Structure Modeling

Janusz M. Bujnicki, Tomasz Puton, Michal Boniecki, 2012 .

Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR.

Trushar R. Patel, J. Bujnicki, M. Boniecki, 2014, Journal of structural biology.

S6:S18 ribosomal protein complex interacts with a structural motif present in its own mRNA

J. Bujnicki, M. Boniecki, S. Dunin-Horkawicz, 2013, RNA.

present in its own mRNA S 6 : S 18 ribosomal protein complex interacts with a structural motif Material Supplemental

J. Bujnicki, S. Dunin-Horkawicz, D. Matelska, 2013 .

Theoretical model of prion propagation: A misfolded protein induces misfolding

Lucjan Piela, Andrzej Kolinski, Michal Boniecki, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Protein fragment reconstruction using various modeling techniques

Andrzej Kolinski, Jeffrey Skolnick, Piotr Rotkiewicz, 2003, J. Comput. Aided Mol. Des..

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

J. Bujnicki, K. Rother, W. Dawson, 2015, Nucleic acids research.

Computational modeling of RNA 3D structures, with the aid of experimental restraints

Janusz M Bujnicki, Marcin Magnus, Wayne Dawson, 2014, RNA biology.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Feng Ding, Kristian Rother, Thomas Hermann, 2012, RNA.

Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms2io6A37 in tRNA

Michal Boniecki, Anna Czerwoniec, Katarzyna H. Kaminska, 2007, Proteins.

Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site

Janusz M Bujnicki, Michal Boniecki, Ichizo Kobayashi, 2008, BMC Structural Biology.

I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition

Janusz M. Bujnicki, Michal Boniecki, Jerzy Orlowski, 2007, Bioinform..

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

Feng Ding, Janusz M Bujnicki, Lin Huang, 2020, RNA.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.

RNAProbe: a web server for normalization and analysis of RNA structure probing data

Tomasz K. Wirecki, J. Bujnicki, M. Boniecki, 2020, Nucleic Acids Res..

Structural bioinformatics Advance Access publication November 21, 2011

Kristian Rother, Janusz M. Bujnicki, Kaja Milanowska, 2011 .

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

Feng Ding, Jian Wang, Janusz M Bujnicki, 2015, RNA.

Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement

J. Skolnick, A. Kolinski, D. Kihara, 2001, Proteins.

structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

Christopher A. Lavender, K. Weeks, E. Westhof, 2012 .

SimRNAweb: a web server for RNA 3D structure modeling with optional restraints

Janusz M. Bujnicki, Michal Boniecki, Marcin Magnus, 2016, Nucleic Acids Res..

Modeling of Three-Dimensional RNA Structures Using SimRNA.

Tomasz K. Wirecki, J. Bujnicki, M. Boniecki, 2020, Methods in molecular biology.

RNA and protein 3D structure modeling: similarities and differences

Kristian Rother, Janusz M. Bujnicki, Tomasz Puton, 2011, Journal of molecular modeling.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Christopher A. Lavender, K. Weeks, A. Serganov, 2012, RNA.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.

RNA and protein 3D structure modeling: similarities and differences

J. Bujnicki, Tomasz Puton, Magdalena Rother, 2011, Journal of molecular modeling.

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information

Janusz M. Bujnicki, Catarina Almeida, Michal Boniecki, 2017, Nucleic Acids Res..

structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

Christopher A. Lavender, K. Weeks, A. Serganov, 2012 .