Huafeng Xu

发表

The Induced Matching Extendability of C2n(1, k)

Huafeng Xu, Xianhui Bo, 2010, Ars Comb..

Nearest Neighbor Search in General Metric Spaces Using a Tree Data Structure with a Simple Heuristic

Dimitris K. Agrafiotis, Huafeng Xu, 2003, J. Chem. Inf. Comput. Sci..

Improving Sampling by Exchanging Hamiltonians with Efficiently Configured Nonequilibrium Simulations.

David E Shaw, Robert M. Dirks, Huafeng Xu, 2012, Journal of chemical theory and computation.

Solution of Grey Chance Constrained Programming and Convexity of its Feasible Set

Zhigeng Fang, Huafeng Xu, Yongli Bai, 2013, J. Networks.

Global output-feedback finite-time stabilization for a class of stochastic nonlinear cascaded systems

Huawei Niu, Qixun Lan, Yamei Liu, 2017, Kybernetika.

A Geodesic Framework for Analyzing Molecular Similarities

Dimitris K. Agrafiotis, Huafeng Xu, 2003, J. Chem. Inf. Comput. Sci..

Molecular dynamics - Scalable algorithms for molecular dynamics simulations on commodity clusters

John L. Klepeis, Edmond Chow, David E. Shaw, 2006, SC.

Conformational Sampling by Self-Organization

Dimitris K. Agrafiotis, Huafeng Xu, Sergei Izrailev, 2003, J. Chem. Inf. Comput. Sci..

A self-organizing principle for learning nonlinear manifolds

Huafeng Xu, Dimitris K Agrafiotis, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Key mutations stabilize antigen-binding conformation during affinity maturation of a broadly neutralizing influenza antibody lineage

Huafeng Xu, Hua-Xin Liao, Thomas B Kepler, 2015, Proteins.

Publisher's Note: Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations [Phys. Rev. E80, 046705 (2009)]

Ron O. Dror, Huafeng Xu, Michael P. Eastwood, 2009 .

Can Water Polarizability Be Ignored in Hydrogen Bond Kinetics

Harry A. Stern, Huafeng Xu, Bruce J. Berne, 2002 .

Exploring the nonlinear geometry of protein homology

Huafeng Xu, Dimitris K Agrafiotis, D. Agrafiotis, 2003, Protein science : a publication of the Protein Society.

Characterizing Receptor Flexibility to Predict Mutations That Lead to Human Adaptation of Influenza Hemagglutinin

Huafeng Xu, David E. Shaw, D. Shaw, 2020, bioRxiv.

Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations.

Michael P Eastwood, Ron O Dror, Huafeng Xu, 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

Multicanonical jump walk annealing: An efficient method for geometric optimization

Huafeng Xu, Bruce J. Berne, B. Berne, 2000 .

Stochastic Proximity Embedding: Methods and Applications

Pu Liu, Huafeng Xu, Deepak Bandyopadhyay, 2010, Molecular informatics.

Preconfiguration of the antigen-binding site during affinity maturation of a broadly neutralizing influenza virus antibody

Thomas B. Kepler, Huafeng Xu, Surender Khurana, 2012, Proceedings of the National Academy of Sciences.