Léonard Dubois

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Edoardo Pasolli, P. Manghi, F. Beghini, 2022, bioRxiv.

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

David A. Drew, T. Spector, F. Beghini, 2021, Nature Medicine.

The person-to-person transmission landscape of the gut and oral microbiomes

T. Spector, Edoardo Pasolli, P. Manghi, 2023, Nature.

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

F. Beghini, C. Huttenhower, N. Segata, 2021, Nature Medicine.

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

P. Manghi, F. Beghini, C. Huttenhower, 2020, bioRxiv.

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Edoardo Pasolli, P. Manghi, F. Beghini, 2023, Nature Biotechnology.

Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year

S. Manara, F. Armanini, M. Valles-Colomer, 2024, Cell host & microbe.