Mark R Viant

发表

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control

Jennifer A Kirwan, Ralf J M Weber, David I Broadhurst, 2014, Scientific Data.

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

Ola Spjuth, Christoph Steinbeck, David Johnson, 2018 .

Profiling MS proteomics data using smoothed non‐linear energy operator and Bayesian additive regression trees

Xiaoli Li, Xin Yao, Shan He, 2009, Proteomics.

Use cases, best practice and reporting standards for metabolomics in regulatory toxicology

Pim E G Leonards, Philippe Rocca-Serra, Richard D Beger, 2019, Nature Communications.

International NMR-based environmental metabolomics intercomparison exercise.

Mark R Viant, Tobias K Karakach, Timothy W Collette, 2009, Environmental science & technology.

Vision of a near future: Bridging the human health-environment divide. Toward an integrated strategy to understand mechanisms across species for chemical safety assessment.

Imran Shah, Andrew White, Francesco Falciani, 2020, Toxicology in vitro : an international journal published in association with BIBRA.

New ideas for non-animal approaches to predict repeated-dose systemic toxicity: Report from an EPAA Blue Sky Workshop.

Catherine Mahony, Sebastian Maurer-Stroh, Thomas B Knudsen, 2020, Regulatory toxicology and pharmacology : RTP.

The role of reporting standards for metabolite annotation and identification in metabolomic studies

Christoph Steinbeck, Reza M Salek, Royston Goodacre, 2013, GigaScience.

Recent developments in environmental metabolomics.

Mark R Viant, M. Viant, 2008, Molecular bioSystems.

Optimized metabolite extraction from blood serum for 1H nuclear magnetic resonance spectroscopy.

Mark R Viant, Christian Ludwig, Abdul-Hamid Emwas, 2008, Analytical biochemistry.

Metabolic effects of dinoseb, diazinon and esfenvalerate in eyed eggs and alevins of Chinook salmon (Oncorhynchus tshawytscha) determined by 1H NMR metabolomics.

Mark R Viant, Ronald S Tjeerdema, M. Viant, 2006, Aquatic toxicology.

Improved identification of metabolites in complex mixtures using HSQC NMR spectroscopy.

Mark R Viant, Jeffrey S de Ropp, D. L. Woodruff, 2008, Analytica chimica acta.

How close are we to complete annotation of metabolomes?

Mark R Viant, Warwick B Dunn, M. Viant, 2017, Current opinion in chemical biology.

Water pentamer: characterization of the torsional-puckering manifold by terahertz VRT spectroscopy.

Mark R Viant, F. Keutsch, M. Viant, 2005, The journal of physical chemistry. A.

Effects of temperature on host-pathogen-drug interactions in red abalone, Haliotis rufescens, determined by 1H NMR metabolomics.

Mark R Viant, Ronald S Tjeerdema, M. Viant, 2006, Environmental science & technology.

A complete workflow for high-resolution spectral-stitching nanoelectrospray direct-infusion mass-spectrometry-based metabolomics and lipidomics

Jasper Engel, Ralf J M Weber, Mark R Viant, 2017, Nature Protocols.

Aggregation and dispersion of silver nanoparticles in exposure media for aquatic toxicity tests.

Mark R Viant, Kevin Chipman, Jamie R Lead, 2011, Journal of chromatography. A.

nmrML: A Community Supported Open Data Standard for the Description, Storage, and Exchange of NMR Data.

Christoph Steinbeck, Daniel Schober, Jie Hao, 2018, Analytical chemistry.

Spectral relative standard deviation: a practical benchmark in metabolomics.

Mark R Viant, Timothy W Collette, Helen M. Parsons, 2009, The Analyst.

A signal filtering method for improved quantification and noise discrimination in fourier transform ion cyclotron resonance mass spectrometry-based metabolomics data

Theodoros N. Arvanitis, Theodoros N Arvanitis, Mark R Viant, 2009, Journal of the American Society for Mass Spectrometry.

Discriminating between different acute chemical toxicities via changes in the daphnid metabolome.

Ralf J M Weber, Mark R Viant, Ralf J. M. Weber, 2010, Toxicological sciences : an official journal of the Society of Toxicology.

Direct sampling of organisms from the field and knowledge of their phenotype: key recommendations for environmental metabolomics.

Mark R Viant, Adam Hines, M. Viant, 2007, Environmental science & technology.

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy

Christoph Steinbeck, Reza M Salek, Pablo Moreno, 2016, Metabolomics.

NMR-based metabolomics: a powerful approach for characterizing the effects of environmental stressors on organism health.

Mark R Viant, M. Viant, Eric S Rosenblum, 2003, Environmental science & technology.

Metabolic changes in flatfish hepatic tumours revealed by NMR-based metabolomics and metabolic correlation networks.

Theodoros N. Arvanitis, Theodoros N Arvanitis, Mark R Viant, 2008, Journal of proteome research.

Metabolomics Discovers Early-Response Metabolic Biomarkers that Can Predict Chronic Reproductive Fitness in Individual Daphnia magna

Mark R Viant, M. Viant, N. Taylor, 2018, Metabolites.

The critical importance of defined media conditions in Daphnia magna nanotoxicity studies.

Mark R Viant, Jamie R Lead, M. Viant, 2013, Toxicology letters.

Toxic actions of dinoseb in medaka (Oryzias latipes) embryos as determined by in vivo 31P NMR, HPLC-UV and 1H NMR metabolomics.

Mark R Viant, Ronald S Tjeerdema, M. Viant, 2006, Aquatic toxicology.

Two-dimensional J-resolved NMR spectroscopy: review of a key methodology in the metabolomics toolbox.

Mark R Viant, Christian Ludwig, C. Ludwig, 2010, Phytochemical analysis : PCA.

Revealing the metabolome of animal tissues using 1H nuclear magnetic resonance spectroscopy.

Mark R Viant, M. Viant, 2007, Methods in molecular biology.

An NMR metabolomic investigation of early metabolic disturbances following traumatic brain injury in a mammalian model

Mark R Viant, M. Viant, R. Berman, 2005, NMR in biomedicine.

Discrimination models using variance-stabilizing transformation of metabolomic NMR data.

David M. Rocke, Mark R Viant, David M Rocke, 2004, Omics : a journal of integrative biology.

Hepatic transcriptomic and metabolomic responses in the Stickleback (Gasterosteus aculeatus) exposed to ethinyl-estradiol.

Paul Baker, Francesco Falciani, Huifeng Wu, 2010, Aquatic toxicology.

Environmental metabolomics using 1H-NMR spectroscopy.

Mark R Viant, M. Viant, 2008, Methods in molecular biology.

Discovery of metabolic signatures for predicting whole organism toxicology.

Francesco Falciani, Mark R Viant, Adam Hines, 2010, Toxicological sciences : an official journal of the Society of Toxicology.

Metabolomics of microliter hemolymph samples enables an improved understanding of the combined metabolic and transcriptional responses of Daphnia magna to cadmium.

Mark R Viant, Chris Vulpe, M. Viant, 2011, Environmental science & technology.

Quantitative Lipoprotein Subclass and Low Molecular Weight Metabolite Analysis in Human Serum and Plasma by 1H NMR Spectroscopy in a Multilaboratory Trial.

Manfred Spraul, Elaine Holmes, John C Lindon, 2018, Analytical chemistry.