Dong Liu

发表

GCHN-DTI: Predicting drug-target interactions by graph convolution on heterogeneous networks.

Hongjun Zhang, Xianfang Wang, Wei Wang, 2022, Methods.

DPLA: prediction of protein-ligand binding affinity by integrating multi-level information

Bin Sun, Hongjun Zhang, Xianfang Wang, 2021, 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine

Dong Liu, Chao Sun, Jun Meng, 2014, BMC Bioinformatics.

Inferring plant microRNA functional similarity using a weighted protein-protein interaction network

Dong Liu, Jun Meng, Yushi Luan, 2015, BMC Bioinformatics.

DLS: A Link Prediction Method Based on Network Local Structure for Predicting Drug-Protein Interactions

Hehe Lv, Yu Zhang, Wei Wang, 2020, Frontiers in Bioengineering and Biotechnology.

PseAraUbi: predicting arabidopsis ubiquitination sites by incorporating the physico-chemical and structural features

Hongjun Zhang, Xianfang Wang, Wei Wang, 2022, Plant Molecular Biology.

GraphGPSM: a global scoring model for protein structure using graph neural networks

J. Liu, Dong Liu, Guang-Xing He, 2023, bioRxiv.

Prediction of DNA-Binding Protein–Drug-Binding Sites Using Residue Interaction Networks and Sequence Feature

Hongjun Zhang, Xianfang Wang, Wei Wang, 2022, Frontiers in Bioengineering and Biotechnology.

Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine

Jun Meng, Yushi Luan, Dong Liu, 2014, BMC Bioinformatics.

GraphPLBR: Protein-Ligand Binding Residue Prediction With Deep Graph Convolution Network

Bin Sun, Hongjun Zhang, Mengxue Yu, 2023, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

On the Response of Nascent Soot Nanostructure and Oxidative Reactivity to Photoflash Exposure

Dong Liu, Ye Wu, Yaoyao Ying, 2017 .

GraphCPLMQA: Assessing protein model quality based on deep graph coupled networks using protein language model

J. Liu, Le Song, Hui Li, 2023, bioRxiv.

Domain-based multi-domain protein and complex structure prediction using inter-domain interactions from deep learning

Yuhao Xia, Gui-jun Zhang, Dong Liu, 2023, bioRxiv.

DeepUMQA3: a web server for model quality assessment of protein complexes

J. Liu, Gui-jun Zhang, Dong Liu, 2023, bioRxiv.

PPDTS: Predicting potential drug–target interactions based on network similarity

Hongjun Zhang, Xianfang Wang, Yu Zhang, 2021, IET systems biology.