A. Feder

发表

LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data

D. Petrov, A. Bergland, A. Feder, 2012, PloS one.

State-dependent evolutionary models reveal modes of solid tumor growth

Nicola F. Müller, T. Bedford, A. Feder, 2022, bioRxiv.

State-dependent evolutionary models reveal modes of solid tumour growth

Nicola F. Müller, T. Bedford, A. Feder, 2022, bioRxiv.

Challenging conventional wisdom on the evolution of resistance to multi-drug HIV treatment: Lessons from data and modeling

Pleuni S. Pennings, P. Pennings, K. Harper, 2019, bioRxiv.

The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens

Pleuni S Pennings, A. F. Feder, Nandita R. Garud, 2015, Molecular ecology.

Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome

Anders Albrechtsen, Torben Hansen, Rasmus Nielsen, 2011, PLoS genetics.

Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV

K. Theys, P. Pennings, A. Stern, 2018, PLoS genetics.

Within-patient HIV mutation frequencies reveal fitness costs of CpG dinucleotides, drastic amino acid changes and G→A mutations

K. Theys, P. Pennings, A. Stern, 2016, bioRxiv.

Identifying Signatures of Selection in Genetic Time Series

J. Plotkin, A. F. Feder, S. Kryazhimskiy, 2013, Genetics.

A spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host

D. Petrov, B. Keele, Shiu-Lok Hu, 2017, PLoS pathogens.

More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1

D. Petrov, R. Shafer, S. Holmes, 2016, eLife.

Correction: More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1

D. Petrov, R. Shafer, S. Holmes, 2017, eLife.

Understanding patterns of HIV multi-drug resistance through models of temporal and spatial drug heterogeneity

P. Pennings, C. Brumme, K. Harper, 2019, eLife.

The clarifying role of time series data in the population genetics of HIV

D. Petrov, A. F. Feder, P. Pennings, 2018, bioRxiv.

The Relationship Between Haplotype-Based FST and Haplotype Length

N. Rosenberg, S. Boca, Rohan S. Mehta, 2019, Genetics.

Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces

D. Petrov, J. Hermisson, P. Pennings, 2019, G3: Genes, Genomes, Genetics.

Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces

D. Petrov, J. Hermisson, A. F. Feder, 2019, G3: Genes, Genomes, Genetics.

High resolution spatio-temporal assessment of simian / human immunodeficiency virus ( SHIV ) evolution reveals a highly dynamic process within the host Authors :

D. Petrov, B. Keele, Shiu-Lok Hu, 2017 .

More efficacious drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1

D. Petrov, R. Shafer, S. Rhee, 2015, bioRxiv.

Elevated HIV viral load is associated with higher recombination rate in vivo

A. Feder, Elena V. Romero, 2023, bioRxiv.

Identifying Signatures of Selection in Genetic Time Series

S. Kryazhimskiy, B. Marwick, A. Feder, 2018, Genetics.

The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens

Nandita R. Garud, P. Pennings, Z. Assaf, 2015, Molecular ecology.

Elevated HIV viral load is associated with higher recombination rate in vivo

A. Feder, Elena V. Romero, 2023, bioRxiv.

Identifying Signatures of Selection in Genetic Time Series

J. Plotkin, S. Kryazhimskiy, A. Feder, 2013, Genetics.

High resolution spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host

D. Petrov, B. Keele, Shiu-Lok Hu, 2017, bioRxiv.