E. O. Karakaslar

Transcriptional activation of Jun and Fos members of the AP‐1 complex is a conserved signature of immune aging that contributes to inflammaging

J. Banchereau, R. Korstanje, D. Ucar, 2022, bioRxiv.

Single cell guided deconvolution of bulk transcriptomics recapitulates differentiation stages of acute myeloid leukemia and predicts drug response

J. V. van Dongen, M. Griffioen, P. V. van Veelen, 2022, bioRxiv.

Machine learning assisted intraoperative assessment of brain tumor margins using HRMAS NMR spectroscopy

I. Namer, A. E. Cicek, M. Piotto, 2020, medRxiv.

Single cell guided deconvolution of bulk transcriptomics recapitulates differentiation stages of acute myeloid leukemia and predicts drug response

J. V. van Dongen, M. Griffioen, P. V. van Veelen, 2023, bioRxiv.

AP-1 complex activation is a conserved signature of immune system aging and a potential regulator of inflammaging in human and mice

J. Banchereau, R. Korstanje, D. Ucar, 2021 .

Integrated transcriptional analysis reveals gene expression-based AML subtypes with distinct outcomes and drug responses

M. Griffioen, B. V. D. Reijden, H. Veelken, 2023, medRxiv.

Predicting Carbon Spectrum in Heteronuclear Single Quantum Coherence Spectroscopy for Online Feedback During Surgery

A. Ercument Cicek, Baris Coskun, E. Onur Karakaslar, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Epigenetic memory of coronavirus infection in innate immune cells and their progenitors

Jason D. Buenrostro, Vinay K. Kartha, O. Elemento, 2023, Cell.

cinaR: A comprehensive R package for the differential analyses and functional interpretation of ATAC-seq data

D. Ucar, E. O. Karakaslar, 2021, bioRxiv.

A transcriptomic based deconvolution framework for assessing differentiation stages and drug responses of AML

M. Griffioen, P. V. van Veelen, E. B. van den Akker, 2024, NPJ precision oncology.