Kristopher W. Brannan

发表

Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes

Daniel A. Lorenz, J. Underwood, Ryan J. Marina, 2020, Nature methods.

Control of Transcriptional Elongation by RNA Polymerase II: A Retrospective

D. Bentley, Kristopher W. Brannan, 2012, Genetics research international.

1 Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes 2 3

Daniel A. Lorenz, Ryan J. Marina, B. Yee, 2020 .

HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence

Maya L. Gosztyla, Joy S. Xiang, Katannya Kapeli, 2022, bioRxiv.

Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes

Daniel A. Lorenz, J. Underwood, Ryan J. Marina, 2021, Nature Methods.

Evaluation of Engineered CRISPR-Cas-Mediated Systems for Site-Specific RNA Editing.

Gene W. Yeo, Ryan J. Marina, B. Yee, 2020, Cell reports.

SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.

Gene W. Yeo, M. Washburn, L. Florens, 2016, Molecular cell.

Effects of Transcription Elongation Rate and Xrn2 Exonuclease Activity on RNA Polymerase II Termination Suggest Widespread Kinetic Competition.

Michael A. Cortazar, R. Sheridan, D. Bentley, 2015, Molecular cell.

mRNA decapping factors and the exonuclease Xrn2 function in widespread premature termination of RNA polymerase II transcription.

D. Bentley, K. Hansen, J. Lykke-Andersen, 2012, Molecular cell.

Control of RNA Pol II Speed by PNUTS-PP1 and Spt5 Dephosphorylation Facilitates Termination by a "Sitting Duck Torpedo" Mechanism.

Michael A. Cortazar, R. Sheridan, D. Bentley, 2019, Molecular cell.

HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence

Maya L. Gosztyla, Joy S. Xiang, Katannya Kapeli, 2023, bioRxiv.

From Protein-RNA Predictions toward a Peptide-RNA Code.

Gene W. Yeo, Kristopher W. Brannan, 2016, Molecular cell.

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

Jonathan C. Schmok, Eric L. Van Nostrand, K. Rothamel, 2022, bioRxiv.

Discovery and Functional Interrogation of the Virus and Host RNA Interactome of SARS-Cov-2 Proteins

Jonathan C. Schmok, Eric L. Van Nostrand, Joy S. Xiang, 2021, SSRN Electronic Journal.

Large-scale map of RNA binding protein interactomes across the mRNA life-cycle

M. Jovanović, Ella Doron-Mandel, Assael A. Madrigal, 2023, bioRxiv.

mRNA decapping factors and the exonuclease Xrn2 function in widespread premature termination of RNA polymerase II transcription.

D. Bentley, K. Hansen, J. Lykke-Andersen, 2012, Molecular cell.

Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes

Daniel A. Lorenz, J. Underwood, Ryan J. Marina, 2021, Nature Methods.