Chengfei Yan

发表

Predicting peptide binding sites on protein surfaces by clustering chemical interactions

Chengfei Yan, Xiaoqin Zou, X. Zou, 2015, J. Comput. Chem..

Inclusion of the orientational entropic effect and low‐resolution experimental information for protein–protein docking in Critical Assessment of PRedicted Interactions (CAPRI)

Chengfei Yan, Xiaoqin Zou, Sheng-You Huang, 2013, Proteins.

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

Daisuke Kihara, Keehyoung Joo, Daisuke Kuroda, 2016, Proteins.

Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015

Chengfei Yan, Xiaoqin Zou, Xianjin Xu, 2017, Journal of Computer-Aided Molecular Design.

MDock: An Ensemble Docking Suite for Molecular Docking, Scoring and In Silico Screening

Chengfei Yan, Xiaoqin Zou, X. Zou, 2015 .

Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions.

Bo Wang, Mark Gerstein, Chengfei Yan, 2019, Structure.

Blind Prediction of Protein-Peptide Complex Structures: A Novel Method and a Web Server

Chengfei Yan, Xiaoqin Zou, Xianjin Xu, 2018 .

MDockPeP: An ab‐initio protein–peptide docking server

Chengfei Yan, Xiaoqin Zou, Xianjin Xu, 2018, J. Comput. Chem..

HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps

Mark Gerstein, William Stafford Noble, Chengfei Yan, 2016, bioRxiv.

Supervised enhancer prediction with epigenetic pattern recognition and targeted validation

Mark Gerstein, Chengfei Yan, Axel Visel, 2018, Nature Methods.

Automated Large-Scale File Preparation, Docking, and Scoring: Evaluation of ITScore and STScore Using the 2012 Community Structure-Activity Resource Benchmark

Chengfei Yan, Xiaoqin Zou, Lin Jiang, 2013, J. Chem. Inf. Model..

Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks

Chengfei Yan, Xiaoqin Zou, Zhiwei Ma, 2016, J. Chem. Inf. Model..

Performance of MDockPP in CAPRI rounds 28‐29 and 31‐35 including the prediction of water‐mediated interactions

Chengfei Yan, Xiaoqin Zou, Sam Z Grinter, 2017, Proteins.

Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction.

Chengfei Yan, Xiaoqin Zou, Xianjin Xu, 2016, Structure.

Genomics and data science: an application within an umbrella

Mark Gerstein, Chengfei Yan, Shantao Li, 2019, Genome Biology.