Sjoerd J. de Vries

Dynamic Control of Selectivity in the Ubiquitination Pathway Revealed by an ASP to GLU Substitution in an Intra-Molecular Salt-Bridge Network

Alexandre M. J. J. Bonvin, Adrien S. J. Melquiond, Sjoerd J. L. van Wijk, 2012, PLoS Comput. Biol..

Intramolecular surface contacts contain information about protein-protein interface regions

Alexandre M. J. J. Bonvin, Sjoerd J. de Vries, A. Bonvin, 2006, Bioinform..

Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach

Isaure Chauvot de Beauchêne, Martin Zacharias, Sjoerd J. de Vries, 2016, PLoS Comput. Biol..

The pepATTRACT web server for blind, large-scale peptide–protein docking

Pierre Tufféry, Julien Rey, Sjoerd J. de Vries, 2017, Nucleic Acids Res..

WeNMR: Structural Biology on the Grid

Dmitri I. Svergun, Stefano Dal Pra, Torsten Herrmann, 2011, Journal of Grid Computing.

Development and Application of a Fully Blind Flexible Peptide-protein Docking Protocol, pepATTRACT

Martin Zacharias, Sjoerd J. de Vries, Christina E. M. Schindler, 2016 .

Fast and accurate grid representations for atom‐based docking with partner flexibility

Martin Zacharias, Sjoerd J. de Vries, M. Zacharias, 2017, J. Comput. Chem..

Structure Resource Fully Blind Peptide-Protein Docking with pepATTRACT

Martin Zacharias, Sjoerd J. de Vries, M. Zacharias, 2015 .