Ivo Grosse

发表

Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data

Michael Seifert, Jens Keilwagen, Marc Strickert, 2008, German Conference on Bioinformatics.

Ivo Grosse, Ralf Eggeling, Teemu Roos, 2014, AISTATS.

Predicting miRNA targets utilizing an Extended Profile HMM

Jens Keilwagen, Ivo Grosse, Stefan Posch, 2010, GCB.

Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research

Joachim Denzler, Birgitta König-Ries, H. Martin Bücker, 2014, DATA.

Dispom: a Discriminative de-novo Motif Discovery Tool Based on the Jstacs Library

Michael Seifert, Jens Keilwagen, Marc Strickert, 2013, J. Bioinform. Comput. Biol..

A general approach for discriminative de novo motif discovery from high-throughput data

Jens Keilwagen, Ivo Grosse, Stefan Posch, 2013, GCB.

Dealing with small data: On the generalization of context trees

Mikko Koivisto, Ivo Grosse, Ralf Eggeling, 2015, ICML.

Bayesian Conditional Gaussian Network Classifiers with Applications to Mass Spectra Classification pdf

Ivo Grosse, Jesús Cerquides, Victor Bellon, 2013, arXiv.org.

Optimal Block-Based Trimming for Next Generation Sequencing

Ivo Grosse, Matthias Müller-Hannemann, Ivo Hedtke, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Identification of transcription factor binding sites with variable-order Bayesian networks

Armin Shmilovici, Ivo Grosse, Stefan Posch, 2005, Bioinform..

Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models

Alexander Schliep, Michael Seifert, Marc Strickert, 2011, Bioinform..

plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants

Ivo Grosse, Peter F. Stadler, David Langenberger, 2014, Front. Plant Sci..

Data Structures for Genome Annotation, Alternative Splicing, and Validation

Ivo Grosse, Jürgen Kleffe, Sven Mielordt, 2006, DILS.

PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R

Jens Keilwagen, Ivo Grosse, Jan Grau, 2015, Bioinform..

Bioinformatics challenges of next generation sequencing

Ivo Grosse, Katrin Hoffmann, 2016, it Inf. Technol..

Gene selection criterion for discriminant microarray data analysis based on extreme value distributions

Ivo Grosse, Wentian Li, Wentian Li, 2003, RECOMB '03.

Comparison of NML and Bayesian scoring criteria for learning parsimonious Markov models

Ivo Grosse, Ralf Eggeling, Teemu Roos, 2012 .

German Conference on Bioinformatics 2009, 28th to 30th September 2009, Martin Luther University Halle-Wittenberg, Germany

Ivo Grosse, Stefan Posch, Peter F. Stadler, 2009, German Conference on Bioinformatics.

Applications of statistical physics and information theory to the analysis of DNA sequences

Ivo Grosse, 2000 .

Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis

Jens Keilwagen, Ivo Grosse, Stefan Posch, 2010, BMC Bioinformatics.

Functional microRNA targets in protein coding sequences

Ivo Grosse, Martin Reczko, Artemis G. Hatzigeorgiou, 2012, Bioinform..

Explaining gene responses by linear modeling

Ivo Grosse, Andreas Gogol-Döring, Yvonne Poeschl, 2014, GCB.

miRGen 2.0: a database of microRNA genomic information and regulation

Timos K. Sellis, Ivo Grosse, Molly Megraw, 2009, Nucleic Acids Res..

Computational Recognition of RNA Splice Sites by Exact Algorithms for the Quadratic Traveling Salesman Problem

Gerold Jäger, Jens Keilwagen, Ivo Grosse, 2015, Comput..

On Optimal Read Trimming in Next Generation Sequencing and Its Complexity

Ivo Grosse, Matthias Müller-Hannemann, Ivo Hedtke, 2014, AlCoB.

Unrealistic phylogenetic trees may improve phylogenetic footprinting

Ivo Grosse, Jesús Cerquides, Martin Nettling, 2017, Bioinform..

Extended Sunflower Hidden Markov Models for the recognition of homotypic cis-regulatory modules}

Ivo Grosse, Ralf Eggeling, Ioana M. Lemnian, 2013, GCB.

PCT and conditional sequence logo at position 19.

Jens Keilwagen, Ivo Grosse, Stefan Posch, 2014 .

Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression

Ivo Grosse, Wentian Li, Fengzhu Sun, 2004, J. Comput. Biol..

CR-EST: a resource for crop ESTs

Uwe Scholz, Matthias Lange, Ivo Grosse, 2004, Nucleic Acids Res..

Meta-All: a system for managing metabolic pathway information

Uwe Scholz, Ivo Grosse, Falk Schreiber, 2006, BMC Bioinformatics.

Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies

Ivo Grosse, Jesús Cerquides, Martin Nettling, 2017, BMC Bioinformatics.

Recognition of splice sites using maximum conditional likelihood

Jens Keilwagen, Ivo Grosse, Stefan Posch, 2007, LWA.

DRUMS: Disk Repository with Update Management and Select option for high throughput sequencing data

Ivo Grosse, Andreas Both, Nils Thieme, 2014, BMC Bioinformatics.

Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data

Ivo Grosse, Ralf Eggeling, Teemu Roos, 2015, BMC Bioinformatics.

VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees

Ivo Grosse, Stefan Posch, Jan Grau, 2006, Nucleic Acids Res..

Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden Markov Models

Michael Seifert, Jens Keilwagen, Marc Strickert, 2016, BIOSIGNALS.

DNA visual and analytic data mining

Georges G. Grinstein, Ivo Grosse, Eugene Stanley, 1997 .

Comments on "linguistic features in eukaryotic genomes"

Ivo Grosse, Wentian Li, Wentian Li, 2004, Complex..

Revamping Space-omics in Europe.

Alexander Gabel, Ivo Grosse, Gary Hardiman, 2020, Cell systems.

Using Data Warehouse Technology in Crop Plant Bioinformatics

Uwe Scholz, Ivo Grosse, Andreas Stephanik, 2007, J. Integr. Bioinform..

On the relevance of model orders to discriminative learning of Markov models

Jens Keilwagen, Ivo Grosse, Stefan Posch, 2007, LWA.

Unifying generative and discriminative learning principles

Jens Keilwagen, Marc Strickert, Ivo Grosse, 2009, BMC Bioinformatics.

epiGBS2: an improved protocol and automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing

Ivo Grosse, Koen J. F. Verhoeven, Kees van Oers, 2020, bioRxiv.

Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data

Michael Seifert, Jens Keilwagen, Marc Strickert, 2009, Bioinform..

InMoDe: tools for learning and visualizing intra-motif dependencies of DNA binding sites

Ivo Grosse, Ralf Eggeling, Jan Grau, 2016, Bioinform..

Prediction of regulatory targets of alternative isoforms of the epidermal growth factor receptor in a glioblastoma cell line

Ivo Grosse, Claus Weinholdt, David H. Ardell, 2019, BMC Bioinformatics.

Applications of Recursive Segmentation to the Analysis of DNA Sequences

Ivo Grosse, Wentian Li, Pedro Bernaola-Galván, 2002, Comput. Chem..

Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana

Michael Seifert, Marc Strickert, Ivo Grosse, 2012, PLoS Comput. Biol..

Inhomogeneous Parsimonious Markov Models

Edgar Wingender, Ivo Grosse, Ralf Eggeling, 2013, ECML/PKDD.

Evolution of the AMP-Activated Protein Kinase Controlled Gene Regulatory Network

Ivo Grosse, André Gohr, Martin Nettling, 2018 .

Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences

Jens Keilwagen, Ivo Grosse, Stefan Posch, 2012, J. Mach. Learn. Res..

Recognition of cis-Regulatory Elements with Vombat

Alexander E. Kel, Ivo Grosse, Stefan Posch, 2007, J. Bioinform. Comput. Biol..

Algorithms for learning parsimonious context trees

Mikko Koivisto, Ivo Grosse, Ralf Eggeling, 2018, Machine Learning.

De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference

Jens Keilwagen, Marc Strickert, Ivo Grosse, 2011, PLoS Comput. Biol..

Supervised Posteriors for DNA-motif Classification

Alexander E. Kel, Jens Keilwagen, Ivo Grosse, 2007, German Conference on Bioinformatics.

DNA visual and analytic data mining

Georges G. Grinstein, Ivo Grosse, Eugene Stanley, 1997, Proceedings. Visualization '97 (Cat. No. 97CB36155).

kASA: Taxonomic Analysis of Metagenomic Data on a Notebook

Ivo Grosse, Andreas Gogol-Döring, Silvio Weging, 2019 .

myTAI: evolutionary transcriptomics with R

Alexander Gabel, Jialin Liu, Ivo Grosse, 2017, Bioinform..

Probabilistic approaches to transcription factor binding site prediction.

Jens Keilwagen, Ivo Grosse, Jan Grau, 2010, Methods in molecular biology.

BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology

Christoph Steinbeck, Ivo Grosse, Janna Hastings, 2015, BMC Bioinformatics.

DiffLogo: a comparative visualization of sequence motifs

Jens Keilwagen, Ivo Grosse, Stefan Posch, 2015, BMC Bioinformatics.

tSFM 1.0: tRNA Structure-Function Mapper

Ivo Grosse, David H. Ardell, Travis J. Lawrence, 2021, Bioinform..

Time-lag cross-correlations in collective phenomena

Ivo Grosse, Boris Podobnik, H. E. Stanley, 2010 .

One thousand plant transcriptomes and the phylogenomics of green plants

Xun Xu, Fan Yang, Ivo Grosse, 2019, Nature.

Joint Analysis of Dependent Features within Compound Spectra Can Improve Detection of Differential Features

Ivo Grosse, Steffen Neumann, Diana Trutschel, 2015, Front. Bioeng. Biotechnol..

Fold-Change-Specific Enrichment Analysis (FSEA): Quantification of Transcriptional Response Magnitude for Functional Gene Groups

Ivo Grosse, Daniil S Wiebe, Nadezhda A Omelyanchuk, 2020, Genes.

Experiment design beyond gut feeling: statistical tests and power to detect differential metabolites in mass spectrometry data

Ivo Grosse, Steffen Neumann, Diana Trutschel, 2014, Metabolomics.

Stochastic processes with power-law stability and a crossover in power-law correlations

Ivo Grosse, Boris Podobnik, H. Eugene Stanley, 2002 .

Using Data Warehouse Technology in Crop Plant Bioinformatics

Uwe Scholz, Ivo Grosse, Andreas Stephanik, 2007, J. Integr. Bioinform..

Repeats and correlations in human DNA sequences.

Ivo Grosse, Hanspeter Herzel, Dirk Holste, 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

SNP2CAPS: a SNP and INDEL analysis tool for CAPS marker development.

Ivo Grosse, Thomas Thiel, Andreas Graner, 2004, Nucleic acids research.

Fractionally integrated process with power-law correlations in variables and magnitudes.

Ivo Grosse, Boris Podobnik, Davor Horvatic, 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

Motif clustering with implications for transcription factor interactions

Jens Keilwagen, Ivo Grosse, Jan Grau, 2015 .

Genetic analysis of bolting after winter in sugar beet (Beta vulgaris L.)

Ivo Grosse, Christian Jung, Ioana Lemnian, 2014, Theoretical and Applied Genetics.

ARCH–GARCH approaches to modeling high-frequency financial data

Ivo Grosse, Boris Podobnik, H. Eugene Stanley, 2004 .

Ivo Grosse, Boris Podobnik, H Eugene Stanley, 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

Optimized Probe Masking for Comparative Transcriptomics of Closely Related Species

Ivo Grosse, Yvonne Poeschl, Marcel Quint, 2013, PloS one.

Comparison of the oral microbiome of patients with generalized aggressive periodontitis and periodontitis-free subjects.

Ivo Grosse, Katrin Hoffmann, Martin Porsch, 2019, Archives of oral biology.

Nikolay V. Dokholyan, Ivo Grosse, Boris Podobnik, 2007 .