Jef D Boeke

发表

A scalable peptide-GPCR language for engineering multicellular communication

Sonja Billerbeck, James Brisbois, Neta Agmon, 2018, Nature Communications.

Regulated nucleosome mobility and the histone code

Jef D Boeke, Cynthia Wolberger, J. Boeke, 2004, Nature Structural &Molecular Biology.

Short-chain fatty acid activation by acyl-coenzyme A synthetases requires SIR2 protein function in Salmonella enterica and Saccharomyces cerevisiae.

Jef D Boeke, Hidekazu Takahashi, J. Boeke, 2003, Genetics.

Stacking the deck: double-tiled DNA microarrays

Rafael A Irizarry, Jef D Boeke, Francisco Martínez-Murillo, 2006, Nature Methods.

High temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast

Xuekui Zhang, Ling Cai, Hongkai Ji, 2014, Nature Structural &Molecular Biology.

Coupling Yeast Golden Gate and VEGAS for Efficient Assembly of the Violacein Pathway in Saccharomyces cerevisiae.

Jef D Boeke, James Chuang, J. Boeke, 2018, Methods in molecular biology.

Molecular archeology of L1 insertions in the human genome

Jef D Boeke, David Landsman, Wojciech Makalowski, 2002, Genome Biology.

Human L1 element target‐primed reverse transcription in vitro

Jef D Boeke, J. Boeke, G. Cost, 2002, The EMBO journal.

Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes

Hongkai Ji, Jef D Boeke, Zhicheng Ji, 2017, Nucleic acids research.

dSLAM analysis of genome-wide genetic interactions in Saccharomyces cerevisiae.

Jef D Boeke, J. Boeke, S. Sookhai-Mahadeo, 2007, Methods.

TE-array—a high throughput tool to study transposon transcription

Jef D Boeke, Andrew E Jaffe, Sarah J Wheelan, 2013, BMC Genomics.

RADOM, an efficient in vivo method for assembling designed DNA fragments up to 10 kb long in Saccharomyces cerevisiae.

Jef D Boeke, Ying-Jin Yuan, Kun Yang, 2015, ACS synthetic biology.

Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae.

Jef D Boeke, Ronald W Davis, Ronald W. Davis, 2006, Genome research.

Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription.

Rafael A Irizarry, Jef D Boeke, Hidekazu Takahashi, 2006, Molecular cell.

Long interspersed element-1 protein expression is a hallmark of many human cancers.

Martin S. Taylor, Gary L Gallia, Christine A Iacobuzio-Donahue, 2014, The American journal of pathology.

Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma

Christine A Iacobuzio-Donahue, Jef D Boeke, Alvin Makohon-Moore, 2015, Nature Medicine.

Yeast Golden Gate (yGG) for the Efficient Assembly of S. cerevisiae Transcription Units.

Yizhi Cai, Neta Agmon, Jef D Boeke, 2015, ACS synthetic biology.

Teaching Synthetic Biology, Bioinformatics and Engineering to Undergraduates: The Interdisciplinary Build-a-Genome Course

Jef D Boeke, Srinivasan Chandrasegaran, Joel S Bader, 2009, Genetics.

Local definition of Ty1 target preference by long terminal repeats and clustered tRNA genes.

Jef D Boeke, J. Boeke, Y. Eby, 2004, Genome research.

Analysis of genetic interactions on a genome-wide scale in budding yeast: diploid-based synthetic lethality analysis by microarray.

Jef D Boeke, Brian D. Peyser, R. Irizarry, 2008, Methods in molecular biology.

Global synthetic-lethality analysis and yeast functional profiling.

Rafael A Irizarry, Jef D Boeke, Joel S Bader, 2006, Trends in genetics : TIG.

High Frequency Retrotransposition in Cultured Mammalian Cells

Jef D Boeke, J. V. Moran, Ralph J DeBerardinis, 1996, Cell.

Use of Mixture Models in a Microarray-Based Screening Procedure for Detecting Differentially Represented Yeast Mutants

Zhijin Wu, Rafael A Irizarry, Jef D Boeke, 2003, Statistical applications in genetics and molecular biology.

Genome-wide consequences of deleting any single gene.

Jef D Boeke, Maitreya J. Dunham, Maitreya J Dunham, 2013, Molecular cell.

The Build-a-Genome course.

Jef D Boeke, Srinivasan Chandrasegaran, Joel S Bader, 2012, Methods in molecular biology.

Retrotransposon Ty1 RNA contains a 5'-terminal long-range pseudoknot required for efficient reverse transcription.

Jef D Boeke, Katarzyna J Purzycka, J. Boeke, 2013, RNA.

Plug and play modular strategies for synthetic retrotransposons.

Kathryn A. O’Donnell, Jef D Boeke, J. Boeke, 2009, Methods.

Bug mapping and fitness testing of chemically synthesized chromosome X

Feng Gao, Ying Wang, Fei-Fei Li, 2017, Science.

A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation.

Jef D Boeke, Joel S Bader, J. Bader, 2008, Genes & development.

Meeting Report: The Role of the Mobilome in Cancer.

Jef D Boeke, J. Boeke, K. Burns, 2016, Cancer research.

Circular permutation of a synthetic eukaryotic chromosome with the telomerator

Jef D Boeke, J. Boeke, L. Mitchell, 2014, Proceedings of the National Academy of Sciences.

New Orthogonal Transcriptional Switches Derived from Tet Repressor Homologues for Saccharomyces cerevisiae Regulated by 2,4-Diacetylphloroglucinol and Other Ligands.

Jef D Boeke, J. Boeke, S. Ikushima, 2017, ACS synthetic biology.

A toolbox of immunoprecipitation-grade monoclonal antibodies to human transcription factors

David Fenyö, Richard M Myers, Gaetano T Montelione, 2018, Nature Methods.

Human L1 Retrotransposon Encodes a Conserved Endonuclease Required for Retrotransposition

Jef D Boeke, J. V. Moran, J. Boeke, 1996, Cell.

Multichange isothermal mutagenesis: a new strategy for multiple site-directed mutations in plasmid DNA.

Yizhi Cai, Jef D Boeke, James Chuang, 2013, ACS synthetic biology.

3D organization of synthetic and scrambled chromosomes

Yue Shen, Yizhi Cai, Huanming Yang, 2017, Science.

A high throughput mutagenic analysis of yeast sumo structure and function

Jian Lu, Jeffrey J. Gray, Jef D Boeke, 2017, PLoS genetics.

Intrinsic biocontainment: Multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes

Yizhi Cai, Neta Agmon, Jef D Boeke, 2015, Proceedings of the National Academy of Sciences.

Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots.

Jef D Boeke, Loris Mularoni, J. Boeke, 2012, Genome research.

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

Jianhui Gong, Jian Wang, Xun Xu, 2016, Genome research.

Design-A-Gene with GeneDesign.

Jef D Boeke, Joel S Bader, Sarah M Richardson, 2012, Methods in molecular biology.