Olivier Poch

发表

Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods

Valentín Ruano-Rubio, Olivier Poch, Julie Dawn Thompson, 2009, BMC Bioinformatics.

A new projection method for biological semantic map generation

Olivier Poch, Hoan N. Nguyen, Nicolas Wicker, 2010 .

A snapshot full-Stokes spectropolarimeter for detecting life on Earth

Olivier Poch, Christoph U. Keller, Frans Snik, 2019, Optical Engineering + Applications.

Blast sampling for structural and functional analyses

Olivier Poch, Gilbert Deléage, Anne Friedrich, 2007, BMC Bioinformatics.

EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data

Olivier Poch, Francisco Prosdocimi, Benjamin Linard, 2011, Evolutionary bioinformatics online.

Additional file 5

Olivier Poch, Raymond Ripp, Johan-Owen De Craene, 2012 .

PipeAlign: a new toolkit for protein family analysis

Olivier Poch, Julie Dawn Thompson, Jean Muller, 2003, Nucleic Acids Res..

RASCAL: Rapid Scanning and Correction of Multiple Sequence Alignments

Olivier Poch, Julie Dawn Thompson, Jean-Claude Thierry, 2003, Bioinform..

SIBIS: a Bayesian model for inconsistent protein sequence estimation

Olivier Poch, Julie Dawn Thompson, Walyd Khenoussi, 2014, Bioinform..

DbW: automatic update of a functional family-specific multiple alignment

Olivier Poch, Frédéric Plewniak, Veronique Prigent, 2005, Bioinform..

Methodology article A new look towards BAC-based array C G H through a comprehensive comparison with oligo-based array C G H

Olivier Poch, Ian G. Mills, Nicolas W icker, 2007 .

PARSEC: PAtteRn SEarch and Contextualization

Olivier Poch, Alexis Allot, Raymond Ripp, 2013, Bioinform..

MACSIMS : multiple alignment of complete sequences information management system

Olivier Poch, Julie Dawn Thompson, Geoffrey J. Barton, 2006, BMC Bioinformatics.

KD4v: comprehensible knowledge discovery system for missense variant

Olivier Poch, Julie Dawn Thompson, Jean Muller, 2012, Nucleic Acids Res..

Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle

Sidahmed Benabderrahmane, Amedeo Napoli, Olivier Poch, 2009, INFORSID.

File S1. Figure 1

Olivier Poch, Ian G. Mills, Ramzi Temanni, 2014 .

Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes

Olivier Poch, Julie Dawn Thompson, Christian J. Michel, 2019, Biosyst..

A new protein linear motif benchmark for multiple sequence alignment software

Olivier Poch, Julie Dawn Thompson, Toby J. Gibson, 2008, BMC Bioinformatics.

PROBE: analysis and visualization of protein block-level evolution

Olivier Poch, Julie Dawn Thompson, Odile Lecompte, 2018, Bioinform..

A Geometric Representation of Protein Sequences

Bernd Hamann, Patrice Koehl, Olivier Poch, 2007, 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007).

The EVI-GENORET Database

Olivier Poch, Raymond Ripp, Wolfgang Raffelsberger, 2007 .

A maximum likelihood approximation method for Dirichlet's parameter estimation

Olivier Poch, Jean Muller, Nicolas Wicker, 2008, Comput. Stat. Data Anal..

BAliBASE 3.0: Latest developments of the multiple sequence alignment benchmark

Olivier Poch, Patrice Koehl, Raymond Ripp, 2005, Proteins.

Strategies for Reliable Exploitation of Evolutionary Concepts in High Throughput Biology

Olivier Poch, Julie D. Thompson, Anthony Levasseur, 2008, Evolutionary bioinformatics online.

LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system

Olivier Poch, Julie Dawn Thompson, Renaud Vanhoutrève, 2016, BMC Bioinformatics.

Multidimensional Fitting for Multivariate Data Analysis

Olivier Poch, Myriam Maumy, Nicolas Wicker, 2010, J. Comput. Biol..

M-ORBIS: Mapping of mOleculaR Binding sItes and Surfaces

Olivier Poch, Laurent-Philippe Albou, Dino Moras, 2010, Nucleic Acids Res..

Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis

Sidahmed Benabderrahmane, Amedeo Napoli, Olivier Poch, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes

Olivier Poch, Julie D Thompson, Pierre Collet, 2020, BMC Bioinform..

RReportGenerator: automatic reports from routine statistical analysis using R

Olivier Poch, David Kieffer, Luc Moulinier, 2008, Bioinform..

MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers

Olivier Poch, Julie Dawn Thompson, Alexis Allot, 2017, Journal of medical Internet research.

Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis

Sidahmed Benabderrahmane, Amedeo Napoli, Olivier Poch, 2012, Int. J. Comput. Biol. Drug Des..

IntelliGO: a new vector-based semantic similarity measure including annotation origin

Sidahmed Benabderrahmane, Amedeo Napoli, Olivier Poch, 2010, BMC Bioinformatics.

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations

Olivier Poch, Julie Dawn Thompson, Jean-Claude Thierry, 2001, Nucleic Acids Res..

11. Strategies for Effi cient Exploitation of the Informational Content of Protein Multiple Alignments

Olivier Poch, Luc Moulinier, Anne Friedrich, 2019 .

MAGOS: multiple alignment and modelling server

Olivier Poch, Julie Dawn Thompson, Christophe Geourjon, 2006, Bioinform..

File S1. Table 10

Olivier Poch, Ian G. Mills, Ramzi Temanni, 2014 .

Ballast: Blast post-processing based on locally conserved segments

Olivier Poch, Julie Dawn Thompson, Frédéric Plewniak, 2000, Bioinform..

Décrypthon Grid - Grid Resources Dedicated to Neuromuscular Disorders

Olivier Poch, Eddy Caron, Frédéric Desprez, 2010, HealthGrid.

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

Olivier Poch, Julie Dawn Thompson, Frédéric Plewniak, 1999, Bioinform..

Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis

Olivier Poch, Julie Dawn Thompson, Aron Marchler-Bauer, 2009, Briefings Bioinform..

New Challenges and Strategies for Multiple Sequence Alignment in the Proteomics Era

Olivier Poch, Julie D. Thompson, J. Thompson, 2005 .

Introduction du nouveau centre de données biomédicales Décrypthon

Olivier Poch, Hoan Nguyen, Anne Friedrich, 2008, CORIA.

OrthoInspector: comprehensive orthology analysis and visual exploration

Olivier Poch, Julie Dawn Thompson, Benjamin Linard, 2011, BMC Bioinformatics.

PromAn: an integrated knowledge-based web server dedicated to promoter analysis

Olivier Poch, Frédéric Chalmel, Laurent Bianchetti, 2006, Nucleic Acids Res..

Intelligent Integrative Knowledge Bases: Bridging Genomics, Integrative Biology and Translational Medicine

Olivier Poch, Julie Dawn Thompson, Hoan Nguyen, 2014, Interactive Knowledge Discovery and Data Mining in Biomedical Informatics.

MSV3d: database of human MisSense variants mapped to 3D protein structure

Olivier Poch, Julie Dawn Thompson, Jean Muller, 2012, Database J. Biol. Databases Curation.

Valid: Validation of Protein Sequence Quality Based on Multiple Alignment Data

Olivier Poch, Julie Dawn Thompson, Odile Lecompte, 2005, J. Bioinform. Comput. Biol..

OrthoInspector 2.0: Software and database updates

Olivier Poch, Julie Dawn Thompson, Alexis Allot, 2015, Bioinform..

Knowledge Discovery in Variant Databases Using Inductive Logic Programming

Olivier Poch, Julie D. Thompson, Tien-Dao Luu, 2013, Bioinformatics and biology insights.

A comprehensive comparison of multiple sequence alignment programs

Olivier Poch, Julie Dawn Thompson, Frédéric Plewniak, 1999, Nucleic Acids Res..

ICDS database: interrupted CoDing sequences in prokaryotic genomes

Olivier Poch, Jean Muller, Raymond Ripp, 2005, Nucleic Acids Res..

INEX-MED: a Knowledge Graph to explore and link heterogeneous bio-medical data

Alban Gaignard, Hala Skaf-Molli, Olivier Poch, 2019 .

Database tool MSV3d: database of human MisSense variants mapped to 3D protein structure

Olivier Poch, Luc Moulinier, Julie D. Thompson, 2013 .

A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i)

Olivier Poch, Julie Dawn Thompson, Carlos Bermejo-Das-Neves, 2014, BMC Bioinformatics.

OrthoInspector 3.0: open portal for comparative genomics

Olivier Poch, Julie Dawn Thompson, Raymond Ripp, 2018, Nucleic Acids Res..

General principle of ICDS detection

Olivier Poch, Jean Muller, Raymond Ripp, 2011 .

Heterogeneous biological data integration with declarative query language

Olivier Poch, Julie Dawn Thompson, Hoan Nguyen, 2014, IBM J. Res. Dev..

PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease

Ronald J. A. Wanders, Olivier Poch, Aurora Pujol, 2006, Nucleic Acids Res..

SURVEY AND SUMMARY Issues in bioinformatics benchmarking: the case study of multiple sequence alignment

Olivier Poch, Julie D. Thompson, Mohamed Radhouene Aniba, 2010 .

GOAnno: GO annotation based on multiple alignment

Olivier Poch, Julie Dawn Thompson, Jean Muller, 2005, Bioinform..

Spliceator: multi-species splice site prediction using convolutional neural networks

Olivier Poch, Luc Moulinier, Anne Jeannin-Girardon, 2021, BMC Bioinform..

Potential role of the X circular code in the regulation of gene expression

Olivier Poch, Christian J. Michel, Raymond Ripp, 2021, Biosyst..

LEON: multiple aLignment Evaluation Of Neighbours.

Olivier Poch, J. Thompson, O. Poch, 2004, Nucleic acids research.

Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program.

Olivier Poch, Frédéric Chalmel, Aurélie Lardenois, 2006, Human molecular genetics.

M13 endopeptidases: New conserved motifs correlated with structure, and simultaneous phylogenetic occurrence of PHEX and the bony fish

Olivier Poch, Laurent Bianchetti, O. Poch, 2002, Proteins.

Prebiotic-like chemistry on Titan.

Olivier Poch, Patrice Coll, François Raulin, 2012, Chemical Society reviews.

Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness.

Olivier Poch, Xavier Zanlonghi, Odile Lecompte, 2013, American journal of human genetics.

Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs

Olivier Poch, Marc Delarue, Dino Moras, 1990, Nature.

SM2PH‐db: an interactive system for the integrated analysis of phenotypic consequences of missense mutations in proteins involved in human genetic diseases

Olivier Poch, Anne Friedrich, Emmanuel Bettler, 2010, Human mutation.

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

Olivier Poch, Benjamin Linard, Odile Lecompte, 2011, PloS one.

Transcriptomic Analysis of Human Retinal Detachment Reveals Both Inflammatory Response and Photoreceptor Death

Olivier Poch, Raymond Ripp, Wolfgang Raffelsberger, 2011, PloS one.

EGFR and EphA2 are host factors for hepatitis C virus entry and possible targets for antiviral therapy

Olivier Poch, Wolfgang Raffelsberger, Patrick Pessaux, 2011, Nature Medicine.

SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages

Olivier Poch, Frédéric Plewniak, F. Plewniak, 2007, Nucleic acids research.

Sequence and Comparative Genomic Analysis of Actin-related Proteins □ D Sequence Searches and Alignment Sequence Analysis

Olivier Poch, Evelyne Friederich, O. Poch, 2022 .

PtdIns5P regulation through evolution: roles in membrane trafficking?

Olivier Poch, Jocelyn Laporte, Odile Lecompte, 2008, Trends in biochemical sciences.

AlexSys: a knowledge-based expert system for multiple sequence alignment construction and analysis

Olivier Poch, Aron Marchler-Bauer, Mohamed Radhouene Aniba, 2010, Nucleic acids research.

A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH

Olivier Poch, Nicolas Wicker, Maija Wolf, 2007, BMC Genomics.

Proteome Adaptation to High Temperatures in the Ectothermic Hydrothermal Vent Pompeii Worm

Olivier Poch, Odile Lecompte, J. Weissenbach, 2012, PloS one.

Signature of the oligomeric behaviour of nuclear receptors at the sequence and structural level

Olivier Poch, Yann Brelivet, Dino Moras, 2004, EMBO reports.

In Vivo Topoisomerase I Inhibition Attenuates the Expression of Hypoxia-Inducible Factor 1α Target Genes and Decreases Tumor Angiogenesis

Olivier Poch, Wolfgang Raffelsberger, Eric Guérin, 2012, Molecular medicine.

The evolutionary origin of peroxisomes: an ER-peroxisome connection.

Olivier Poch, Stéphane Fourcade, Agatha Schlüter, 2006, Molecular biology and evolution.

Domain architecture of the p62 subunit from the human transcription/repair factor TFIIH deduced by limited proteolysis and mass spectrometry analysis.

Olivier Poch, Valérie Lamour, Dino Moras, 2004, Biochemistry.

Chemical evolution of organic molecules under Mars-like UV radiation conditions simulated in the laboratory with the "Mars organic molecule irradiation and evolution" (MOMIE) setup

Olivier Poch, Jean-Jacques Correia, Cyril Szopa, 2013 .

MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences

Patrice Koehl, Olivier Poch, Stephen R. Holbrook, 2005, Nucleic acids research.

RPK1, an essential yeast protein kinase involved in the regulation of the onset of mitosis, shows homology to mammalian dual-specificity kinases

Olivier Poch, Etienne Schwob, O. Poch, 1994, Molecular and General Genetics MGG.

Laboratory insights into the chemical and kinetic evolution of several organic molecules under simulated Mars surface UV radiation conditions

Olivier Poch, Cyril Szopa, S. Kaci, 2014 .

Space as a Tool for Astrobiology: Review and Recommendations for Experimentations in Earth Orbit and Beyond

Elke Rabbow, Hajime Yano, Frances Westall, 2017 .

Effect of nontronite smectite clay on the chemical evolution of several organic molecules under simulated martian surface ultraviolet radiation conditions.

Olivier Poch, Cyril Szopa, Patrice Coll, 2015, Astrobiology.

The SCITEAS experiment: Optical characterizations of sublimating icy planetary analogues

Nicolas Thomas, Olivier Poch, Antoine Pommerol, 2015 .

Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis

Olivier Poch, Frédéric Chalmel, Doulaye Dembélé, 2004, Oncogene.

Exome sequencing of Bardet–Biedl syndrome patient identifies a null mutation in the BBSome subunit BBIP1 (BBS18)

Olivier Poch, Véronique Geoffroy, Corinne Stoetzel, 2013, Journal of Medical Genetics.

Whole-exome sequencing identifies mutations in GPR179 leading to autosomal-recessive complete congenital stationary night blindness.

Olivier Poch, Sabine Defoort-Dhellemmes, Xavier Zanlonghi, 2012, American journal of human genetics.

Controversies in modern evolutionary biology: the imperative for error detection and quality control

Olivier Poch, Francisco Prosdocimi, Benjamin Linard, 2012, BMC Genomics.

Remote Sensing of Potential Biosignatures from Rocky, Liquid, or Icy (Exo)Planetary Surfaces.

Nicolas Thomas, Olivier Poch, Antoine Pommerol, 2017, Astrobiology.

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.

Olivier Poch, Raymond Ripp, Odile Lecompte, 2002, Nucleic acids research.

OSIRIS observations of meter-sized exposures of H2O ice at the surface of 67P/Churyumov-Gerasimenko and interpretation using laboratory experiments

Giampiero Naletto, Mariolino De Cecco, Olivier Poch, 2015 .