Julie Dawn Thompson

发表

Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods

Valentín Ruano-Rubio, Olivier Poch, Julie Dawn Thompson, 2009, BMC Bioinformatics.

Clustal W and Clustal X version 2.0

Rodrigo Lopez, Julie Dawn Thompson, Desmond G. Higgins, 2007, Bioinform..

Identifying Single Copy Orthologs in Metazoa

Peer Bork, Julie Dawn Thompson, Jean Muller, 2011, PLoS Comput. Biol..

PipeAlign: a new toolkit for protein family analysis

Olivier Poch, Julie Dawn Thompson, Jean Muller, 2003, Nucleic Acids Res..

RASCAL: Rapid Scanning and Correction of Multiple Sequence Alignments

Olivier Poch, Julie Dawn Thompson, Jean-Claude Thierry, 2003, Bioinform..

SIBIS: a Bayesian model for inconsistent protein sequence estimation

Olivier Poch, Julie Dawn Thompson, Walyd Khenoussi, 2014, Bioinform..

MACSIMS : multiple alignment of complete sequences information management system

Olivier Poch, Julie Dawn Thompson, Geoffrey J. Barton, 2006, BMC Bioinformatics.

KD4v: comprehensible knowledge discovery system for missense variant

Olivier Poch, Julie Dawn Thompson, Jean Muller, 2012, Nucleic Acids Res..

Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes

Olivier Poch, Julie Dawn Thompson, Christian J. Michel, 2019, Biosyst..

A new protein linear motif benchmark for multiple sequence alignment software

Olivier Poch, Julie Dawn Thompson, Toby J. Gibson, 2008, BMC Bioinformatics.

PROBE: analysis and visualization of protein block-level evolution

Olivier Poch, Julie Dawn Thompson, Odile Lecompte, 2018, Bioinform..

2 – Heuristic Sequence Alignment Methods

Julie Dawn Thompson, 2016 .

LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system

Olivier Poch, Julie Dawn Thompson, Renaud Vanhoutrève, 2016, BMC Bioinformatics.

4 – Multiple Alignment Quality Control

Julie Dawn Thompson, 2016 .

3 – Statistical Alignment Approaches

Julie Dawn Thompson, 2016 .

BIOINFORMATICS APPLICATIONS

Peer Bork, Julie Dawn Thompson, Jean Muller, 2022 .

MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers

Olivier Poch, Julie Dawn Thompson, Alexis Allot, 2017, Journal of medical Internet research.

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations

Olivier Poch, Julie Dawn Thompson, Jean-Claude Thierry, 2001, Nucleic Acids Res..

Introducing variable gap penalties to sequence alignment in linear space

Julie Dawn Thompson, J. Thompson, 1995, Comput. Appl. Biosci..

MAGOS: multiple alignment and modelling server

Olivier Poch, Julie Dawn Thompson, Christophe Geourjon, 2006, Bioinform..

Ballast: Blast post-processing based on locally conserved segments

Olivier Poch, Julie Dawn Thompson, Frédéric Plewniak, 2000, Bioinform..

Classification multi-étiquettes pour l'alignement multiple de séquences protéiques

Nicolas Lachiche, Julie Dawn Thompson, Lina Fahed, 2013, EGC.

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

Olivier Poch, Julie Dawn Thompson, Frédéric Plewniak, 1999, Bioinform..

Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis

Olivier Poch, Julie Dawn Thompson, Aron Marchler-Bauer, 2009, Briefings Bioinform..

OrthoInspector: comprehensive orthology analysis and visual exploration

Olivier Poch, Julie Dawn Thompson, Benjamin Linard, 2011, BMC Bioinformatics.

Detection of dsRNA-binding domains in RNA helicase A and Drosophila maleless: implications for monomeric RNA helicases

Julie Dawn Thompson, Toby J. Gibson, T. Gibson, 1994, Nucleic Acids Res..

Intelligent Integrative Knowledge Bases: Bridging Genomics, Integrative Biology and Translational Medicine

Olivier Poch, Julie Dawn Thompson, Hoan Nguyen, 2014, Interactive Knowledge Discovery and Data Mining in Biomedical Informatics.

MSV3d: database of human MisSense variants mapped to 3D protein structure

Olivier Poch, Julie Dawn Thompson, Jean Muller, 2012, Database J. Biol. Databases Curation.

Valid: Validation of Protein Sequence Quality Based on Multiple Alignment Data

Olivier Poch, Julie Dawn Thompson, Odile Lecompte, 2005, J. Bioinform. Comput. Biol..

OrthoInspector 2.0: Software and database updates

Olivier Poch, Julie Dawn Thompson, Alexis Allot, 2015, Bioinform..

A comprehensive comparison of multiple sequence alignment programs

Olivier Poch, Julie Dawn Thompson, Frédéric Plewniak, 1999, Nucleic Acids Res..

Future Perspectives: High-Performance Computing

Julie Dawn Thompson, 2017 .

A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i)

Olivier Poch, Julie Dawn Thompson, Carlos Bermejo-Das-Neves, 2014, BMC Bioinformatics.

PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees

Julie Dawn Thompson, Pierre Pontarotti, Philippe Gouret, 2009, BMC Bioinformatics.

Improved sensitivity of profile searches through the use of sequence weights and gap excision

Julie Dawn Thompson, Desmond G. Higgins, Toby J. Gibson, 1994, Comput. Appl. Biosci..

OrthoInspector 3.0: open portal for comparative genomics

Olivier Poch, Julie Dawn Thompson, Raymond Ripp, 2018, Nucleic Acids Res..

Heterogeneous biological data integration with declarative query language

Olivier Poch, Julie Dawn Thompson, Hoan Nguyen, 2014, IBM J. Res. Dev..

MEMSA: A Robust Parisian EA for Multidimensional Multiple Sequence Alignment

Pierre Collet, Julie Dawn Thompson, Renaud Vanhoutrève, 2017, Artificial Evolution.

GOAnno: GO annotation based on multiple alignment

Olivier Poch, Julie Dawn Thompson, Jean Muller, 2005, Bioinform..