Jiang Qian

发表

Lhx2 regulates temporal changes in chromatin accessibility and transcription factor binding in retinal progenitor cells

Jun Wan, S. Blackshaw, Sheng Liu, 2017, bioRxiv.

SOX9 Plays a Key Role in the Regulation of Visual Cycle Gene Expression in the Retinal Pigment Epithelium*

D. Zack, Jun Wan, R. Kist, 2014 .

Expression of brain-derived neurotrophic factor is regulated by the Wnt signaling pathway

A. Hackam, Jianfei Hu, H. Yi, 2012, Neuroreport.

Phosphorylation of the Chromatin Binding Domain of KSHV LANA

Jun Wan, Heng Zhu, Jianfei Hu, 2012, PLoS pathogens.

Unbiased discovery of interactions at a control locus driving expression of the cancer-specific therapeutic and diagnostic target, mesothelin.

Jun Wan, S. Kern, A. Pandey, 2012, Journal of proteome research.

Off Target, but Sequence-Specific, shRNA-Associated Trans-Activation of Promoter Reporters in Transient Transfection Assays

D. Zack, Jun Wan, T. Masuda, 2016, PloS one.

The amino acid transporter SLC36A4 regulates the amino acid pool in retinal pigmented epithelial cells and mediates the mechanistic target of rapamycin, complex 1 signaling

Jun Wan, J. Handa, R. Puertollano, 2017, Aging cell.

Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation

I. Chowers, D. Zack, N. Esumi, 2005, Nucleic Acids Research.

A proteomic approach to understanding the pathogenesis of idiopathic macular hole formation

Sharon D. Solomon, S. Solomon, Pingbo Zhang, 2017, Clinical Proteomics.

Comparison of Humoral Immune Responses to Epstein-Barr Virus and Kaposi’s Sarcoma–Associated Herpesvirus Using a Viral Proteome Microarray

Jun Wan, G. Hayward, C. Chiou, 2011, The Journal of infectious diseases.

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

Guo Ci Teo, Matthew A. Wyczalkowski, Andy T. Kong, 2019, Cell.

Assessing the model transferability for prediction of transcription factor binding sites based on chromatin accessibility

Sheng Liu, Jiang Qian, Guohua Wang, 2017, BMC Bioinformatics.

Large-scale phenotypic drug screen identifies neuroprotectants in zebrafish and mouse models of retinitis pigmentosa

Jun O. Liu, D. Zack, Hongkai Ji, 2020, bioRxiv.

Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes

Jie Wang, Raghu Machiraju, Jiang Qian, 2016, PLoS Comput. Biol..

Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species.

Sheng Liu, Carlo Colantuoni, Elana J Fertig, 2019, Cell systems.

Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species

Carlo Colantuoni, Elana J. Fertig, Genevieve Stein-O'Brien, 2018, bioRxiv.

Network and Pathway Analysis of Cancer Susceptibility (A)

P. Jia, Youping Deng, R. Schwartz, 2014, Cancer Informatics.

ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration

D. Zack, Hongkai Ji, S. Blackshaw, 2018, Nature Communications.

Investigating cone photoreceptor development using patient-derived NRL null retinal organoids

D. Zack, C. Berlinicke, E. Pierce, 2020, Communications Biology.

Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation

I. Chowers, D. Zack, Jiang Qian, 2005, Nucleic acids research.

Applications of Functional Protein Microarrays in Basic and Clinical Research

Jiang Qian, Heng Zhu, Jiang Qian, 2012, Advances in Genetics.

Functional protein microarray technology

Heng Zhu, Seth Blackshaw, Shaohui Hu, 2010, Wiley interdisciplinary reviews. Systems biology and medicine.

Functional protein microarray

Jiang Qian, S. Blackshaw, Heng Zhu, 2010 .

Integrated Stress Response and Decreased ECM in Cultured Stromal Cells From Keratoconus Corneas

A. Pandey, G. Sathe, Jiang Qian, 2018, Investigative ophthalmology & visual science.

Protein Microarray Characterization of the S-Nitrosoproteome*

T. Dawson, V. Dawson, S. Blackshaw, 2013, Molecular & Cellular Proteomics.

Glycoproteomics-based signatures for tumor subtyping and clinical outcome prediction of high-grade serous ovarian cancer

D. Chan, Hui Zhang, Jiang Qian, 2020, Nature Communications.

Lectin microarrays identify cell-specific and functionally significant cell surface glycan markers.

Y. Li, I. Goldstein, Heng Zhu, 2008, Glycobiology.

Global analysis of the glycoproteome in Saccharomyces cerevisiae reveals new roles for protein glycosylation in eukaryotes

M. Snyder, Jiang Qian, Heng Zhu, 2009, Molecular systems biology.

PanoView: An iterative clustering for single-cell RNA sequencing data

Jiang Qian, Sheng Liu, Dong Won Kim, 2019, bioRxiv.

Human retinal organoids release extracellular vesicles that regulate gene expression in target human retinal progenitor cells

Rajendra Gharbaran, X. Zhong, M. V. Canto-Soler, 2021, Scientific Reports.

Heterozygous IDH1R132H/WT created by “single base editing” inhibits human astroglial cell growth by downregulating YAP

Heng Zhu, S. Xia, Linzhao Cheng, 2018, Oncogene.

EnhancerAtlas 2.0: an updated resource with enhancer annotation in 586 tissue/cell types across nine species

Jiang Qian, Tianshun Gao, Jiang Qian, 2019, Nucleic Acids Res..

scEnhancer: a single-cell enhancer resource with annotation across hundreds of tissue/cell types in three species

Jinqiu Yuan, Yihang Pan, Tianshun Gao, 2021, Nucleic Acids Res..

EAGLE: An algorithm that utilizes a small number of genomic features to predict tissue/cell type-specific enhancer-gene interactions

Tianshun Gao, Jiang Qian, Tianshun Gao, 2019, bioRxiv.

Transcription factors as readers and effectors of DNA methylation

Jiang Qian, Heng Zhu, Guohua Wang, 2016, Nature Reviews Genetics.

PanoView: An iterative clustering method for single-cell RNA sequencing data

Dong Won Kim, Jiang Qian, Seth Blackshaw, 2019, PLoS Comput. Biol..

hPDI: a database of experimental human protein-DNA interactions

Zhi Xie, Jiang Qian, Heng Zhu, 2010, Bioinform..

Foxd1 is required for terminal differentiation of anterior hypothalamic neuronal subtypes

Jun Wan, S. Blackshaw, Jie Wang, 2017, bioRxiv.

Transcriptomic comparison of two selective retinal cell ablation paradigms in zebrafish reveals shared and cell-specific regenerative responses

Jiang Qian, F. Wang, Yong Teng, 2020, bioRxiv.

TiGER: A database for tissue-specific gene expression and regulation

Jiang Qian, Xiong Liu, Heng Zhu, 2008, BMC Bioinformatics.

Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues

D. Zack, Jiang Qian, Xueping Yu, 2006, Nucleic acids research.

Gene expression profiling of purified rat retinal ganglion cells.

R. Farkas, D. Zack, Jiang Qian, 2004, Investigative ophthalmology & visual science.

Systems biology approach to integrative comparative genomics

Jiang Qian, Jimmy Lin, Jiang Qian, 2007, Expert review of proteomics.

Prediction of promoters and enhancers using multiple DNA methylation-associated features

W. Hwang, Heng Zhu, S. Merbs, 2015, BMC Genomics.

Lhx1 Controls Terminal Differentiation and Circadian Function of the Suprachiasmatic Nucleus

Alan C. Rupp, Hong Wang, E. Herzog, 2014, Cell reports.

A genomic atlas of mouse hypothalamic development

Seth Blackshaw, Tomomi Shimogori, Hiromi Mashiko, 2010, Nature Neuroscience.

Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation

D. Zack, Jun Wan, Heng Zhu, 2015, BMC Genomics.

Transcription Factor SOX9 Plays a Key Role in the Regulation of Visual Cycle Gene Expression in the Retinal Pigment Epithelium*

D. Zack, Jun Wan, X. Yang, 2014, The Journal of Biological Chemistry.

SOX 9 regulates visual cycle gene expression 1 SOX 9 Plays a Key Role in the Regulation of Visual Cycle Gene Expression in the Retinal Pigment Epithelium *

D. Zack, Jun Wan, R. Kist, 2014 .

Epithelium Expression in the Retinal Pigment GeneRole in the Regulation of Visual Cycle Transcription Factor SOX 9 Plays a Key Gene Regulation

D. Zack, Jun Wan, R. Kist, 2014 .

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

Guo Ci Teo, Meghan C. Burke, Jeffrey R. Whiteaker, 2020, Cell.

A novel methyl-binding domain protein enrichment method for identifying genome-wide tissue-specific DNA methylation from nanogram DNA samples

D. Zack, Jun Wan, S. Agarwal, 2013, Epigenetics & Chromatin.

Small-molecule–directed, efficient generation of retinal pigment epithelium from human pluripotent stem cells

D. Zack, Jun Wan, Jiang Qian, 2015, Proceedings of the National Academy of Sciences.

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data

Wei Niu, Mark Gerstein, Jiang Qian, 2011, PLoS Comput. Biol..

Analysis of regulatory network topology reveals functionally distinct classes of microRNAs

D. Zack, J. Mendell, Jiang Qian, 2008, Nucleic acids research.

Computational analysis of tissue-specific gene networks: application to murine retinal functional studies

Jiang Qian, Jianfei Hu, Jun Wan, 2010, Bioinform..

Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

Jiang Qian, Xueping Yu, C. Jimmy Lin, 2007, BMC Bioinformatics.

Epigenomic profiling of retinal progenitors reveals LHX2 is required for developmental regulation of open chromatin

Cristina Zibetti, Seth Blackshaw, Jun Wan, 2019, Communications Biology.

Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.

Alexander R. Pico, Matthew A. Wyczalkowski, Sara R. Savage, 2021, Cancer cell.

Lin28A Binds Active Promoters and Recruits Tet1 to Regulate Gene Expression.

Heng Zhu, Peng Jin, Jun Wan, 2016, Molecular cell.

Lin 28 A Binds Active Prom oters and Recruits Tet 1 to Regulate Gene Expression Graphical

Jun Wan, G. Ming, Hongjun Song, 2016 .

Differential DNA methylation identified in the blood and retina of AMD patients

D. Zack, A. Swaroop, A. Jaffe, 2015, Epigenetics.

Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation

D. Zack, Jun Wan, Heng Zhu, 2015, BMC Genomics.

Hypomethylation of the IL 17 RC Promoter in Peripheral Blood Leukocytes Is Not A Hallmark of Age-Related Macular Degeneration

D. Zack, A. Swaroop, D. Mackey, 2014 .

Hypomethylation of the IL17RC promoter in peripheral blood leukocytes is not a hallmark of age-related macular degeneration.

D. Zack, A. Swaroop, D. Mackey, 2013, Cell reports.

Cell-specific cis-regulatory elements and mechanisms of non-coding genetic disease in human retina and retinal organoids.

Victoria E. Jackson, M. Bahlo, S. Blackshaw, 2022, Developmental cell.

Multi-omic Analysis of Developing Human Retina and Organoids Reveals Cell-Specific Cis-Regulatory Elements and Mechanisms of Non-Coding Genetic Disease Risk

Victoria E. Jackson, M. Bahlo, S. Blackshaw, 2021, bioRxiv.

βA1-crystallin regulates glucose metabolism and mitochondrial function in mouse retinal astrocytes by modulating PTP1B activity

J. Sahel, J. Handa, Michael J. Calderon, 2021, Communications biology.

Control of neurogenic competence in mammalian hypothalamic tanycytes

Leighton H. Duncan, S. P. Brown, P. Leavey, 2020, bioRxiv.

Gene regulatory networks controlling vertebrate retinal regeneration

F. Rajaii, S. Blackshaw, J. Ash, 2020, Science.

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

Guo Ci Teo, Matthew A. Wyczalkowski, Andy T. Kong, 2019, Cell.

Transcriptome analysis using next generation sequencing reveals molecular signatures of diabetic retinopathy and efficacy of candidate drugs

Jun Wan, Anand Swaroop, Jiang Qian, 2012, Molecular vision.

Neuronal histone methyltransferase EZH2 regulates neuronal morphogenesis, synaptic plasticity, and cognitive behavior of mice

R. Huganir, Xinzhong Dong, M. Pletnikov, 2019, bioRxiv.

OmicsX: a web server for integrated OMICS analysis

Hui Zhang, Jianbo Pan, Jiang Qian, 2019, bioRxiv.

Integration of IgA and IgG Autoantigens Improves Performance of Biomarker Panels for Early Diagnosis of Lung Cancer*

Shaohui Hu, Heng Zhu, Shuang Liu, 2020, Molecular & Cellular Proteomics.

Identification of Serological Biomarkers for Early Diagnosis of Lung Cancer Using a Protein Array-Based Approach*

Shaohui Hu, Heng Zhu, Shuang Liu, 2017, Molecular & Cellular Proteomics.

Comparative gene expression analysis of murine retina and brain.

G. Parmigiani, A. Hackam, Dongmei Liu, 2004, Molecular vision.

Zika-Virus-Encoded NS 2 A Disrupts Mammalian Cortical Neurogenesis by Degrading Adherens Junction Proteins Graphical

Francisca Rojas Ringeling, Emily M. Lee, G. Ming, 2017 .

Oxidative stress induces mitochondrial dysfunction and a protective unfolded protein response in RPE cells.

Jun Wan, Jiang Qian, J. Handa, 2014, Free radical biology & medicine.

Analysis of KLF4 regulated genes in cancer cells reveals a role of DNA methylation in promoter- enhancer interactions

Jun Wan, Jiang Qian, Heng Zhu, 2018, Epigenetics.

Global Analysis of SUMO-Binding Proteins Identifies SUMOylation as a Key Regulator of the INO80 Chromatin Remodeling Complex*

W. Hwang, Jiang Qian, S. Blackshaw, 2017, Molecular & Cellular Proteomics.

Overview of Protein Microarrays

Heng Zhu, Jiang Qian, Heng Zhu, 2013, Current protocols in protein science.

Functional protein microarray as molecular decathlete: A versatile player in clinical proteomics

Heng Zhu, Eric Cox, Jiang Qian, 2012, Proteomics. Clinical applications.

Dynamics of Regulatory Networks in the Developing Mouse Retina

D. Zack, Hongkai Ji, W. Hwang, 2012, PloS one.

Genomic analysis of gene expression relationships in transcriptional regulatory networks.

M. Gerstein, Haiyuan Yu, N. Luscombe, 2003, Trends in genetics : TIG.

Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data

Mark Gerstein, Jiang Qian, Nicholas M. Luscombe, 2003, Bioinform..

Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae

Xueping Yu, Donald J. Zack, Jiang Qian, 2006, Nucleic acids research.

Global analysis of phosphorylation networks in humans.

W. Hwang, Jiang Qian, Heng Zhu, 2014, Biochimica et biophysica acta.

Conserved herpesvirus kinases target the DNA damage response pathway and TIP60 histone acetyltransferase to promote virus replication.

Sean D. Taverna, P. Desai, Shaohui Hu, 2011, Cell host & microbe.

MeDReaders: a database for transcription factors that bind to methylated DNA

Yadong Wang, Jiang Qian, Guohua Wang, 2017, Nucleic Acids Res..

A Protein Array Screen for Kaposi's Sarcoma-Associated Herpesvirus LANA Interactors Links LANA to TIP60, PP2A Activity, and Telomere Shortening

Shaohui Hu, Heng Zhu, Zhi Xie, 2012, Journal of Virology.

Rapid Identification of Monospecific Monoclonal Antibodies Using a Human Proteome Microarray*

Jef D. Boeke, Heng Zhu, Seth Blackshaw, 2012, Molecular & Cellular Proteomics.

A Human Proteome Array Approach to Identifying Key Host Proteins Targeted by Toxoplasma Kinase ROP18*

Jun Wan, Jiang Qian, Heng Zhu, 2017, Molecular & Cellular Proteomics.

Epithelial to mesenchymal transition (EMT) of human stem cell-derived retinal pigment epithelium shares commonalities with malignancy-associated EMT: a proteomic analysis.

D. Zack, Jun Wan, C. Berlinicke, 2021, Molecular & cellular proteomics : MCP.

A Role for βA3/A1-Crystallin in Type 2 EMT of RPE Cells Occurring in Dry Age-Related Macular Degeneration

J. Handa, S. Xia, I. Bhutto, 2018, Investigative ophthalmology & visual science.

A Role for b A 3 / A 1-Crystallin in Type 2 EMT of RPE Cells Occurring in Dry Age-Related Macular Degeneration

J. Handa, S. Xia, I. Bhutto, 2018 .

Relating periodicity of nucleosome organization and gene regulation

Jiang Qian, C. Jimmy Lin, Jun Wan, 2009, Bioinform..

Transcriptome Landscape of Epithelial to Mesenchymal Transition of Human Stem Cell–Derived RPE

D. Zack, Jun Wan, C. Berlinicke, 2021, Investigative ophthalmology & visual science.

Retinal pigment epithelium transcriptome analysis in chronic smoking reveals a suppressed innate immune response and activation of differentiation pathways.

Koray D. Kaya, A. Swaroop, Jiang Qian, 2020, Free radical biology & medicine.

Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling

S. Blackshaw, Xueping Yu, Shaohui Hu, 2009, Cell.

Identification of novel serological autoantibodies in Takayasu arteritis patients using HuProt arrays.

Heng Zhu, Fengchun Zhang, Jianbo Pan, 2020, Molecular & cellular proteomics : MCP.

Systematic Prediction of Scaffold Proteins Reveals New Design Principles in Scaffold-Mediated Signal Transduction

Jin Zhang, Jiang Qian, Jianfei Hu, 2015, PLoS Comput. Biol..

Primary angle closure glaucoma is characterized by altered extracellular matrix homeostasis in the iris

Pingbo Zhang, C. Dufresne, R. Semba, 2021, Proteomics. Clinical applications.

A widespread decrease of chromatin accessibility in age-related macular degeneration

D. Zack, Hongkai Ji, S. Blackshaw, 2018, bioRxiv.

Protein Acetylation Microarray Reveals that NuA4 Controls Key Metabolic Target Regulating Gluconeogenesis

Jun Wan, S. Berger, J. Boeke, 2009, Cell.

Functional Dissection of a HECT Ubiquitin E3 Ligase*S

Yu-Yi Lin, C. Pickart, Heng Zhu, 2008, Molecular & Cellular Proteomics.

Global Identification of Small Ubiquitin-related Modifier (SUMO) Substrates Reveals Crosstalk between SUMOylation and Phosphorylation Promotes Cell Migration *

Hui Zhang, Jiang Qian, S. Blackshaw, 2018, Molecular & Cellular Proteomics.

Running Title : Global SUMOylation study reveals PTM crosstalk Global Identification of SUMO Substrates Reveals Crosstalk between SUMOylation and Phosphorylation Promotes Cell Migration

Hui Zhang, Jiang Qian, S. Blackshaw, 2018 .

Molecular characteristics of liver metastases from uveal melanoma.

I. Simon, I. Chowers, Xueping Yu, 2007, Investigative ophthalmology & visual science.

Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma.

Jeffrey R. Whiteaker, Ratna R. Thangudu, Samuel H. Payne, 2020, Cell reports.

Activation of diverse signaling pathways by oncogenic PIK3CA mutations

Akhilesh Pandey, Xinyan Wu, Heng Zhu, 2014, Nature Communications.

LRLoop: Feedback loops as a design principle of cell-cell communication

S. Blackshaw, Jie Wang, Ying Xin, 2022, bioRxiv.

An all-to-all approach to the identification of sequence-specific readers for epigenetic DNA modifications on cytosine

Jun Wan, Hongjun Song, P. Jin, 2019, Nature Communications.

Identification of Novel Biomarkers for Behcet Disease Diagnosis Using Human Proteome Microarray Approach*

Heng Zhu, Jiang Qian, Guang Song, 2016, Molecular & Cellular Proteomics.

Role of glia in optic nerve

J. Sahel, I. Bhutto, Sayandip Ghosh, 2020, Progress in Retinal and Eye Research.

Changes in gene expression in experimental glaucoma and optic nerve transection: the equilibrium between protective and detrimental mechanisms.

D. Zack, H. Quigley, M. Pease, 2007, Investigative ophthalmology & visual science.

Pro-Permeability Factors After Dexamethasone Implant in Retinal Vein Occlusion; the Ozurdex for Retinal Vein Occlusion (ORVO) Study.

Ian C. Han, P. Campochiaro, H. Ying, 2015, American journal of ophthalmology.

Discovery and Validation of a Serologic Autoantibody Panel for Early Diagnosis of Esophageal Squamous Cell Carcinoma

Jiang Qian, Heng Zhu, Xiaojie Pan, 2019, Cancer Epidemiology, Biomarkers & Prevention.

Pro-permeability Factors in Diabetic Macular Edema; the Diabetic Macular Edema Treated With Ozurdex Trial.

Christopher J Brady, Ian C. Han, P. Campochiaro, 2016, American journal of ophthalmology.

Regulation of CK2 by Phosphorylation and O-GlcNAcylation Revealed by Semisynthesis

G. Hart, S. Blackshaw, P. Cole, 2011, Nature chemical biology.

Cross-species transcriptomic and epigenomic analysis reveals key regulators of injury response and neuronal regeneration in vertebrate retinas

Dong Won Kim, Jiang Qian, F. Rajaii, 2019 .

Comparative transcriptomic and epigenomic analysis identifies key regulators of injury response and neurogenic competence in retinal glia

Jiang Qian, F. Rajaii, S. Blackshaw, 2019, bioRxiv.

A Screen for Extracellular Signal-Regulated Kinase-Primed Glycogen Synthase Kinase 3 Substrates Identifies the p53 Inhibitor iASPP

Heng Zhu, Zhi Xie, Jianfei Hu, 2015, Journal of Virology.

IReNA: Integrated regulatory network analysis of single-cell transcriptomes and chromatin accessibility profiles

S. Blackshaw, Jie Wang, Pin Lyu, 2021, bioRxiv.

Factors Associated With a Patient’s Decision to Select a Cost-effective vs the Most Effective Therapy for Their Own Eye Disease

A. Sodhi, S. Montaner, Tianshun Gao, 2021, JAMA network open.

Neutrophils homing into the retina trigger pathology in early age-related macular degeneration

Aishwarya, Simon C Watkins, T. Mak, 2019, Communications Biology.

Activating the AKT2–nuclear factor‐κB–lipocalin‐2 axis elicits an inflammatory response in age‐related macular degeneration

S. Chattopadhyay, I. Bhutto, G. Lutty, 2016, The Journal of pathology.

ARQiv-HTS, a versatile whole-organism screening platform enabling in vivo drug discovery at high-throughput rates

Guohua Wang, Hongkai Ji, Liyun Zhang, 2016, Nature Protocols.

Proteome Landscape of Epithelial-to-Mesenchymal Transition (EMT) of Retinal Pigment Epithelium Shares Commonalities With Malignancy-Associated EMT

D. Zack, Jun Wan, C. Berlinicke, 2021, Molecular & Cellular Proteomics : MCP.

An Integrated Systems Biology Approach Identifies the Proteasome as A Critical Host Machinery for ZIKV and DENV Replication

Emily M. Lee, G. Ming, Hongjun Song, 2020, bioRxiv.

Anatomical differences of the protein profile in the rabbit sclera during growth

Y. Liu, Pingbo Zhang, C. Dufresne, 2017, Experimental eye research.

Axon Guidance Signaling Modulates Epithelial to Mesenchymal Transition in Stem Cell-Derived Retinal Pigment Epithelium

D. Zack, Jun Wan, C. Berlinicke, 2018, bioRxiv.

Multiplexed Biomarker Panels Discriminate Zika and Dengue Virus Infection in Humans*

Hee-Sool Rho, Heng Zhu, Daniel Eichinger, 2017, Molecular & Cellular Proteomics.

Temporal patterns of gene expression during calyx of held development

Jun Wan, G. Spirou, M. Dehoff, 2016, Developmental neurobiology.

Assessing the model transferability for prediction of transcription factor binding sites based on chromatin accessibility

Jun Wan, S. Blackshaw, Guohua Wang, 2017, BMC Bioinformatics.

Characterization of Binding Sites of Eukaryotic Transcription Factors

Jiang Qian, C. Jimmy Lin, Donald J. Zack, 2006, Genom. Proteom. Bioinform..

Serum molecular signature for proliferative diabetic retinopathy in Saudi patients with type 2 diabetes

D. Zack, I. Kozák, J. F. Arevalo, 2016, Molecular vision.

Temperature and species-dependent regulation of browning in retrobulbar fat

Dong Won Kim, Jiang Qian, F. Rajaii, 2020, Scientific Reports.

AAgMarker 1.0: a resource of serological autoantigen biomarkers for clinical diagnosis and prognosis of various human diseases

Sheng Liu, Jiang Qian, Heng Zhu, 2017, Nucleic Acids Res..

Discovery and characterization of cross-reactive intrahepatic antibodies in severe alcoholic hepatitis

Zhaoli Sun, Ming-Wen Hu, Bin Gao, 2023, bioRxiv.

Changes in Gene Expression in Experimental Glaucoma and Optic Nerve Transection

D. Zack, H. Quigley, M. Pease, 2007 .

Distinct Modes of Positive and Negative Gene Expression Regulation by Tissue-specific Differential DNA Methylation

D. Zack, Jun Wan, Guohua Wang, 2015 .

Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

D. Zack, Xueping Yu, Jimmy Lin, 2007 .

Neutrophils homing into the retina trigger pathology in early age-related macular degeneration

Aishwarya, Simon C Watkins, T. Mak, 2019, Communications Biology.