Paula Jouhten

发表

BMC Systems Biology BioMed Central Methodology article

Juho Rousu, Esa Pitkänen, Paula Jouhten, 2009 .

13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose

Markku Saloheimo, Merja Penttilä, Esa Pitkänen, 2009, BMC Systems Biology.

Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species

Juho Rousu, Liisa Holm, Jian Hou, 2014, PLoS Comput. Biol..

Metabolic modelling in the development of cell factories by synthetic biology

Paula Jouhten, P. Jouhten, 2012, Computational and structural biotechnology journal.

ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis

Esko Ukkonen, Esa Pitkänen, Ari Rantanen, 2008, J. Integr. Bioinform..

Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae

Matej Oresic, Merja Penttilä, Merja Oja, 2014, BMC Systems Biology.

Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation

Jens Nielsen, Paula Jouhten, Subir K. Nandy, 2010, BMC Systems Biology.

A multi-level study of recombinant Pichia pastoris in different oxygen conditions

Johannes Stadlmann, Brigitte Gasser, Diethard Mattanovich, 2010, BMC Systems Biology.

An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments

Juho Rousu, Esko Ukkonen, Nicola Zamboni, 2008, BMC Bioinformatics.

Seminar Report: Optimal Metabolic Network Identification (OMNI)

Paula Jouhten, 2007 .

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A

Merja Penttilä, Paula Jouhten, Hannu Maaheimo, 2008, BMC Systems Biology.

An analytic and systematic framework for estimating metabolic flux ratios from ¹³C tracer experiments: methodology article

Juho Rousu, Esko Ukkonen, Nicola Zamboni, 2008 .

Dynamic flux balance analysis of the metabolism of Saccharomyces cerevisiae during the shift from fully respirative or respirofermentative metabolic states to anaerobiosis

Merja Penttilä, Paula Jouhten, P. Jouhten, 2012, The FEBS journal.

Correlation of gene expression and protein production rate - a system wide study

Mikko Arvas, Markku Saloheimo, Merja Penttilä, 2011, BMC Genomics.

Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae.

Adam M. Feist, Kiran Raosaheb Patil, Paula Jouhten, 2018, Metabolic engineering.

Metabolic flux profiling of recombinant protein secreting Pichia pastoris growing on glucose:methanol mixtures

Paula Jouhten, Pau Ferrer, Joan Albiol, 2012, Microbial Cell Factories.

Metabolic flux profiling of Pichia pastoris grown on glycerol/methanol mixtures in chemostat cultures at low and high dilution rates.

Thomas Szyperski, Paula Jouhten, Pau Ferrer, 2007, Microbiology.

Central carbon metabolism of Saccharomyces cerevisiae in anaerobic, oxygen-limited and fully aerobic steady-state conditions and following a shift to anaerobic conditions.

Merja Penttilä, Paula Jouhten, Jari Kiuru, 2008, FEMS yeast research.

Transcriptional responses of Saccharomyces cerevisiae to shift from respiratory and respirofermentative to fully fermentative metabolism.

Merja Penttilä, Paula Jouhten, Eija Rintala, 2011, Omics : a journal of integrative biology.

Yeast metabolic chassis designs for diverse biotechnological products

Isabel Rocha, Kiran Raosaheb Patil, Tomasz Boruta, 2016, Scientific Reports.