S. K. Palaniappan

发表

Large scale text mining for deriving useful insights: A case study focused on microbiome

Samik Ghosh, B. Kumar, Ayako Yachie, 2022, Frontiers in Physiology.

Building a reciprocal recommendation system at scale from scratch: Learnings from one of Japan’s prominent dating applications

Nicolas K. Shinada, S. K. Palaniappan, R. Ramanathan, 2020, RecSys.

Systemic immune response profiling with SYLARAS implicates a role for CD45R/B220+ CD8+ T cells in glioblastoma immunology

Sucheendra K. Palaniappan, Jeremy L. Muhlich, P. Sorger, 2019, bioRxiv.

Modeling Variability in Populations of Cells Using Approximated Multivariate Distributions

Matthieu Pichené, Eric Fabre, Blaise Genest, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A Look-Ahead Simulation Algorithm for DBN Models of Biochemical Pathways

Matthieu Pichené, Eric Fabre, Blaise Genest, 2016, HSB.

GPU code generation for ODE-based applications with phased shared-data access patterns

P. S. Thiagarajan, Weng-Fai Wong, Zheng Cui, 2013, ACM Trans. Archit. Code Optim..

A Hybrid Factored Frontier Algorithm for Dynamic Bayesian Networks with a Biopathways Application

P. S. Thiagarajan, Bing Liu, Blaise Genest, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Approximate probabilistic analysis of biopathway dynamics

P. S. Thiagarajan, Weng-Fai Wong, Zheng Cui, 2012, Bioinform..

A hybrid factored frontier algorithm for dynamic Bayesian network models of biopathways

P. S. Thiagarajan, Blaise Genest, Sucheendra K. Palaniappan, 2011, CMSB.

SYLARAS: A Platform for the Statistical Analysis and Visual Display of Systemic Immunoprofiling Data and Its Application to Glioblastoma

Sucheendra K. Palaniappan, Jeremy L. Muhlich, P. Sorger, 2020, Cell systems.

Systemic immune response profiling with SYLARAS implicates a role for CD45R/B220+ CD8+ T cells in glioblastoma immunology

Jeremy L. Muhlich, P. Sorger, S. Santagata, 2019, bioRxiv.

Innate immune memory and homeostasis may be conferred through crosstalk between the TLR3 and TLR7 pathways

P. S. Thiagarajan, Ivet Bahar, Bing Liu, 2016, Science Signaling.

Evolution of research in biomedical sciences - a network-based characterization based on PubMed

M. Spranger, S. K. Palaniappan, Karla Friedrichs, 2020, bioRxiv.

Computational Systems Biology

Samik Ghosh, Sucheendra K. Palaniappan, Ayako Yachie-Kinoshita, 2019, Encyclopedia of Bioinformatics and Computational Biology.

Toward community standards and software for whole-cell modeling

Chris J. Myers, Daewon Lee, Anna Zhukova, 2016, IEEE Transactions on Biomedical Engineering.

Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway

Samik Ghosh, Michael Spranger, Sucheendra K. Palaniappan, 2016, BioNLP@ACL.

Improved statistical model checking methods for pathway analysis

Limsoon Wong, P. S. Thiagarajan, Sucheendra K. Palaniappan, 2012, BMC Bioinformatics.

Extracting Biological Pathway Models From NLP Event Representations pdf

Samik Ghosh, Michael Spranger, Sucheendra K. Palaniappan, 2015, BioNLP@IJCNLP.

Toward standards for tomorrow’s whole-cell models

Arne T. Bittig, Rafael S. Costa, Jonathan R. Karr, 2015 .

Leveraging pre-trained language models for mining microbiome-disease relationships

S. K. Palaniappan, Sathwik Acharya, Nikitha Karkera, 2023, BMC Bioinformatics.

A Reciprocal Embedding Framework For Modelling Mutual Preferences

Sucheendra K. Palaniappan, Junichi Tanaka, Nicolas K. Shinada, 2021, AAAI.

13. Cancer Network Medicine

H. Kitano, Samik Ghosh, T. Hase, 2017 .

Approximate probabilistic analysis of biopathway dynamics

P. Thiagarajan, W. Wong, Bing Liu, 2012, Bioinform..

Systemic Lymphoid Architecture Response Assessment (SYLARAS): An approach to multi-organ, discovery-based immunophenotyping implicates a role for CD45R/B220 CD8T cells in glioblastoma immunology

P. Sorger, Jodene K Moore, S. K. Palaniappan, 2019 .

Statistical Model Checking Based Calibration and Analysis of Bio-pathway Models

David Hsu, P. S. Thiagarajan, Benjamin M. Gyori, 2013, CMSB.

Enabling Personalization for Digital Cognitive Stimulation to Support Communication With People With Dementia: Pilot Intervention Study as a Prelude to AI Development

Tohmi Osaki, S. K. Palaniappan, Nick Hird, 2023, JMIR formative research.

Computational Systems Biology Applications

Samik Ghosh, Sucheendra K. Palaniappan, Ayako Yachie-Kinoshita, 2019, Encyclopedia of Bioinformatics and Computational Biology.

MelAnalyze: Fact-Checking Melatonin claims using Large Language Models and Natural Language Inference

S. K. Palaniappan, Nikitha Karkera, Samik Ghosh, 2024, bioRxiv.