Dent Earl

发表

The Genome 10K Project: A Way Forward Further

D. Haussler, R. Durbin, M. Diekhans, 2015 .

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes

Li Ding, David Haussler, Dent Earl, 2013, Genome Biology.

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

B. vonHoldt, Dent Earl, B. Vonholdt, 2012, Conservation Genetics Resources.

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

Meganathan P. Ramakodi, D. Haussler, A. Smit, 2014, Science.

Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

Jeremiah D. Degenhardt, A. Auton, J. Novembre, 2010, Nature.

Assemblathon 1: a competitive assessment of de novo short read assembly methods.

Nuno A. Fonseca, Shaun D. Jackman, David R. Kelley, 2011, Genome research.

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

David Haussler, Jingchun Zhu, Dent Earl, 2010, Bioinform..

Building a Pan-Genome Reference for a Population

David Haussler, Ngan Nguyen, Glenn Hickey, 2015, J. Comput. Biol..

The genealogy and genetic viability of reintroduced Yellowstone grey wolves

R. Wayne, J. Pollinger, Douglas W. Smith, 2008, Molecular ecology.

Cactus Graphs for Genome Comparisons

David Haussler, Dent Earl, Benedict Paten, 2010, RECOMB.

Sixteen diverse laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

Mark Gerstein, Jane Loveland, Dent Earl, 2018, Nature Genetics.

Sixteen diverse laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

Son K. Pham, Thomas M. Keane, Ian T. Fiddes, 2018, Nature Genetics.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Inanç Birol, Dominique Lavenier, Hamidreza Chitsaz, 2013, GigaScience.

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

Mark Gerstein, Jane Loveland, Dent Earl, 2018, bioRxiv.

Rangewide microsatellite phylogeography of the endangered tidewater goby, Eucyclogobius newberryi (Teleostei: Gobiidae), a genetically subdivided coastal fish with limited marine dispersal

D. Jacobs, C. Bardeleben, K. D. Louie, 2010, Conservation Genetics.

Building a Pangenome Reference for a Population

David Haussler, Ngan Nguyen, Glenn Hickey, 2014, RECOMB.

Cactus: Algorithms for genome multiple sequence alignment.

David Haussler, Ngan Nguyen, Dent Earl, 2011, Genome research.

HAL: a hierarchical format for storing and analyzing multiple genome alignments

David Haussler, Glenn Hickey, Daniel R. Zerbino, 2013, Bioinform..

Alignathon: a competitive assessment of whole-genome alignment methods

David Haussler, Inna Dubchak, Ngan Nguyen, 2014, bioRxiv.

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids.

Roland Kays, John Novembre, Carlos D Bustamante, 2011, Genome research.

Identification of recent hybridization between gray wolves and domesticated dogs by SNP genotyping

E. Ostrander, H. Parker, R. Wayne, 2013, Mammalian Genome.

USING SONGS TO IDENTIFY INDIVIDUAL MEXICAN ANTTHRUSH FORMICARIUS MONILIGER: COMPARISON OF FOUR CLASSIFICATION METHODS

Yuan Yao, Charles E. Taylor, Dent Earl, 2009 .

Identification of recent hybridization between gray wolves and domesticated dogs by SNP genotyping

E. Ostrander, H. Parker, R. Wayne, 2012, Mammalian Genome.

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

Meganathan P. Ramakodi, D. Haussler, A. Smit, 2014, Science.

Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

David Haussler, Dent Earl, Joel Armstrong, 2017, bioRxiv.