Huldrych F. Günthard

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Probing of viral diversity by global haplotype prediction

Armin Töpfer, Francesca Di Giallonardo, Karin J. Metzner, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

The Individualized Genetic Barrier Predicts Treatment Response in a Large Cohort of HIV-1 Infected Patients

Huldrych F. Günthard, Niko Beerenwinkel, Matthias Cavassini, 2013, PLoS Comput. Biol..

Inferring Epidemic Contact Structure from Phylogenetic Trees

Huldrych F. Günthard, Tanja Stadler, Sebastian Bonhoeffer, 2012, PLoS Comput. Biol..

Large-scale inference of conjunctive Bayesian networks

Jack Kuipers, Huldrych F. Günthard, Niko Beerenwinkel, 2016, Bioinform..

Phylodynamics on local sexual contact networks

Huldrych F. Günthard, Tanja Stadler, David A. Rasmussen, 2016, bioRxiv.

Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study

Huldrych F. Günthard, Matthias Cavassini, Manuel Battegay, 2021, PLoS Comput. Biol..

Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case–control study using centralized ultrasensitive 454 pyrosequencing

Karin J. Metzner, Huldrych F. Günthard, E. Nicastri, 2014, The Journal of antimicrobial chemotherapy.

Antiretroviral treatment of adult HIV infection: 2012 recommendations of the International Antiviral Society-USA panel.

Huldrych F. Günthard, Amalio Telenti, Douglas D. Richman, 2012, JAMA.

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

Volker Roth, Beda Joos, Armin Töpfer, 2014, Nucleic acids research.

Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study

Huldrych F. Günthard, Tulio de Oliveira, Lynn Morris, 2016 .

A Framework for Inferring Fitness Landscapes of Patient-Derived Viruses Using Quasispecies Theory

Karin J. Metzner, Huldrych F. Günthard, Niko Beerenwinkel, 2014, Genetics.

Interaction of the gp120 V1V2 loop with a neighboring gp120 unit shields the HIV envelope trimer against cross-neutralizing antibodies

Huldrych F. Günthard, Carsten Magnus, Roland R. Regoes, 2011, The Journal of experimental medicine.

In vivo analysis of efavirenz metabolism in individuals with impaired CYP2A6 function

Huldrych F. Günthard, Matthias Cavassini, Amalio Telenti, 2009, Pharmacogenetics and genomics.

Quantification of In Vivo Replicative Capacity of HIV‐1 in Different Compartments of Infected Cells

Huldrych F. Günthard, Sebastian Bonhoeffer, Bruno Ledergerber, 2001, Journal of acquired immune deficiency syndromes.

Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration

Huldrych F. Günthard, Dominique Goedhals, Susan P. Holmes, 2017, EBioMedicine.

Common Genetic Variation and the Control of HIV-1 in Humans

Elizabeth T. Cirulli, Huldrych F. Günthard, Jacques Fellay, 2009, PLoS genetics.

Using an Epidemiological Model for Phylogenetic Inference Reveals Density Dependence in HIV Transmission

Huldrych F. Günthard, Tanja Stadler, Sebastian Bonhoeffer, 2013, Molecular biology and evolution.

Assessing Predicted HIV-1 Replicative Capacity in a Clinical Setting

Huldrych F. Günthard, Sebastian Bonhoeffer, Christos J. Petropoulos, 2011, PLoS pathogens.

Quantification of in vivo replicative capacity of HIV-1 in different compartments of infected cells.

Beda Joos, Huldrych F. Günthard, Sebastian Bonhoeffer, 2001 .

Ambiguous Nucleotide Calls From Population-based Sequencing of HIV-1 are a Marker for Viral Diversity and the Age of Infection

Beda Joos, Huldrych F. Günthard, Matthias Cavassini, 2011, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2018 Recommendations of the International Antiviral Society–USA Panel

Huldrych F. Günthard, Michael S. Saag, Joseph J. Eron, 2018, JAMA.

Persistence of Transmitted HIV-1 Drug Resistance Mutations Associated with Fitness Costs and Viral Genetic Backgrounds

Huldrych F. Günthard, Mohaned Shilaih, Sebastian Bonhoeffer, 2015, PLoS pathogens.

Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection

Huldrych F. Günthard, Michael C. Zody, Qiandong Zeng, 2012, PLoS pathogens.