Jian Peng

Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction

Yang Liu, Xiaoming Zhao, Yunan Luo, 2019, PLoS Comput. Biol..

Compact Integration of Multi-Network Topology for Functional Analysis of Genes.

Bonnie Berger, Hyunghoon Cho, Jian Peng, 2016, Cell systems.

Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks

Bonnie Berger, Yang Liu, Qing Ye, 2017, Cell systems.

Robust single-cell Hi-C clustering by convolution- and random-walk–based imputation

Jianzhu Ma, Jesse R. Dixon, Jian Peng, 2019, Proceedings of the National Academy of Sciences.

Generalizable and Scalable Visualization of Single-Cell Data Using Neural Networks.

Bonnie Berger, Hyunghoon Cho, Jian Peng, 2018, Cell systems.

Identification of pathways associated with chemosensitivity through network embedding

Sheng Wang, Saurabh Sinha, Liewei Wang, 2017, bioRxiv.

DPPred: An Effective Prediction Framework with Concise Discriminative Patterns

Jiawei Han, Jinfeng Xiao, Jingbo Shang, 2016, IEEE Transactions on Knowledge and Data Engineering.