Viacheslav Fofanov

发表

Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction

Lydia E. Kavraki, Mark Moll, Brian Y. Chen, 2010, BMC Bioinformatics.

How independent are the appearances of n-mers in different genomes?

Yi Luo, B. Montgomery Pettitt, Yuriy Fofanov, 2004, Bioinform..

PIQA: pipeline for Illumina G1 genome analyzer data quality assessment

Yuriy Fofanov, Paul Havlak, Chen Feng, 2009, Bioinform..

Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction

Lydia E. Kavraki, Andreas Martin Lisewski, Olivier Lichtarge, 2006, RECOMB.

Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction

Lydia E. Kavraki, Olivier Lichtarge, Marek Kimmel, 2007, J. Bioinform. Comput. Biol..

The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs

Lydia E. Kavraki, Andreas Martin Lisewski, Olivier Lichtarge, 2007, J. Comput. Biol..

Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs

Lydia E. Kavraki, Olivier Lichtarge, Marek Kimmel, 2004, Pacific Symposium on Biocomputing.

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids

Lydia E. Kavraki, Andreas Martin Lisewski, Olivier Lichtarge, 2008, BMC Bioinformatics.

Effect of the mutation rate and background size on the quality of pathogen identification

Chris Reed, Yuriy Fofanov, Tom Slezak, 2007, Bioinform..

Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites

Viacheslav Fofanov, Jason W. Sahl, Tara N. Furstenau, 2018, BMC Bioinformatics.

Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes

Yuriy Fofanov, Catherine Putonti, Viacheslav Fofanov, 2007, BIOCOMP.