Saptarshi Pyne

Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets

Alireza F. Siahpirani, Sushmita Roy, R. Sridharan, 2022, bioRxiv.

Identifying strengths and weaknesses of methods for computational network inference from single-cell RNA-seq data

Alireza F. Siahpirani, Sushmita Roy, Junha Shin, 2021, bioRxiv.

Impact of the Continuous Evolution of Gene Ontology on the Performance of Similarity Measures for Scoring Confidence of Protein Interactions

Madhusudan Paul, Ashish Anand, Saptarshi Pyne, 2020, SN Computer Science.

Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets

Alireza F. Siahpirani, Sushmita Roy, R. Sridharan, 2023, bioRxiv.

A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen

Sushmita Roy, Jean-Michel Ané, N. Keller, 2023, bioRxiv.

Rapid Reconstruction of Time-varying Gene Regulatory Networks

Ashish Anand, Saptarshi Pyne, Alok Ranjan Kumar, 2018, bioRxiv.

Rapid Reconstruction of Time-varying Gene Regulatory Networks with Limited Main Memory

Ashish Anand, Saptarshi Pyne, A. Anand, 2019, bioRxiv.