Ben Berkhout

发表

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver

Astrid Gall, Jacques Fellay, Oliver Laeyendecker, 2018, Virus evolution.

Second site escape of a T20-dependent HIV-1 variant by a single amino acid change in the CD4 binding region of the envelope glycoprotein

Ben Berkhout, Chris E Baldwin, 2006, Retrovirology.

RNA virus replication, transcription and recombination

Ben Berkhout, B. Berkhout, L. Enjuanes, 2011, RNA biology.

Inhibition of Human Immunodeficiency Virus Type 1 Replication with Artificial Transcription Factors Targeting the Highly Conserved Primer-Binding Site

Ben Berkhout, Carlos F. Barbas, David J. Segal, 2006, Journal of Virology.

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing.

Astrid Gall, Paul Kellam, Swee Hoe Ong, 2017, Virus research.

The Human Immunodeficiency Virus Type 1 Promoter Contains a CATA Box Instead of a TATA Box for Optimal Transcription and Replication

Ben Berkhout, Tim van Opijnen, B. Berkhout, 2004, Journal of Virology.

Derivation of infectious HIV-1 molecular clones with LTR mutations: sensitivity to the CD8+ cell noncytotoxic anti-HIV response.

Ben Berkhout, B. Berkhout, J. Levy, 2008, Virology.

Viral Load Levels Measured at Set-Point Have Risen Over the Last Decade of the HIV Epidemic in the Netherlands

Ard van Sighem, Ben Berkhout, Christophe Fraser, 2009, PloS one.

RNAi and Cellular miRNAs in Infections by Mammalian Viruses

Ben Berkhout, B. Berkhout, J. Haasnoot, 2010, Methods in molecular biology.

HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome

Ben Berkhout, A. Das, B. Berkhout, 2005, Nucleic acids research.

Efficient Human Immunodeficiency Virus Replication Requires a Fine-Tuned Level of Transcription

Ben Berkhout, B. Berkhout, Monique Vink, 2002, Journal of Virology.

Regulated HIV-2 RNA dimerization by means of alternative RNA conformations.

Ben Berkhout, Jørgen Kjems, H. Huthoff, 2002, Nucleic acids research.

Delineation of the Exact Transcription Termination Signal for Type 3 Polymerase III

Ben Berkhout, B. Berkhout, Zongliang Gao, 2017, Molecular therapy. Nucleic acids.

Multiple secondary structure rearrangements during HIV-1 RNA dimerization.

Ben Berkhout, H. Huthoff, B. Berkhout, 2002, Biochemistry.

RNA Polymerase II Activity of Type 3 Pol III Promoters

Ben Berkhout, B. Berkhout, Zongliang Gao, 2018, Molecular therapy. Nucleic acids.

Suppression of RNA Interference by Adenovirus Virus-Associated RNA

Ben Berkhout, B. Berkhout, G. Akusjärvi, 2005, Journal of Virology.

Human Immunodeficiency Virus Type 1 Escapes from RNA Interference-Mediated Inhibition

Ben Berkhout, R. Bernards, A. Das, 2004, Journal of Virology.

miRNA cassettes in viral vectors: problems and solutions.

Ben Berkhout, B. Berkhout, Y. Liu, 2011, Biochimica et biophysica acta.

Survey of the temporal changes in HIV-1 replicative fitness in the Amsterdam Cohort.

Ben Berkhout, B. Berkhout, G. Vanham, 2007, Virology.

Mutation of nucleotides around the +1 position of type 3 polymerase III promoters: The effect on transcriptional activity and start site usage

Ben Berkhout, B. Berkhout, Zongliang Gao, 2017, Transcription.

Evidence for a base triple in the free HIV-1 TAR RNA.

Ben Berkhout, H. Huthoff, B. Berkhout, 2004, RNA.

The HIV-1 Tat Protein Has a Versatile Role in Activating Viral Transcription

Ben Berkhout, A. Das, B. Berkhout, 2011, Journal of Virology.

Comparison of Droplet Digital PCR and Seminested Real-Time PCR for Quantification of Cell-Associated HIV-1 RNA

Linos Vandekerckhove, Ben Berkhout, Ward De Spiegelaere, 2014, PloS one.

In Vitro Evidence That the Untranslated Leader of the HIV-1 Genome Is an RNA Checkpoint That Regulates Multiple Functions through Conformational Changes*

Ben Berkhout, H. Huthoff, B. Berkhout, 2002, The Journal of Biological Chemistry.

A Single H1 Promoter Can Drive Both Guide RNA and Endonuclease Expression in the CRISPR-Cas9 System

Ben Berkhout, B. Berkhout, Zongliang Gao, 2018, Molecular therapy. Nucleic acids.

Lentiviral Vector Design for Multiple shRNA Expression and Durable HIV-1 Inhibition

Ben Berkhout, B. Berkhout, M. Centlivre, 2008, Molecular Therapy.

Protein Promiscuity: Drug Resistance and Native Functions—HIV-1 Case

Andrzej Kloczkowski, Robert L. Jernigan, Taner Z. Sen, 2005, Journal of biomolecular structure & dynamics.

Guidelines for the use and interpretation of assays formonitoring autophagy (3rd edition)

Sangeeta Khare, Xin Qi, Ying Wang, 2016 .

Human coronavirus NL63 employs the severe acute respiratory syndrome coronavirus receptor for cellular entry

Ben Berkhout, B. Berkhout, K. Pyrć, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Deep sequencing of virus-infected cells reveals HIV-encoded small RNAs

Frank Baas, Ben Berkhout, F. Baas, 2011, Nucleic acids research.

HIV-1 N-Glycan Composition Governs a Balance between Dendritic Cell-Mediated Viral Transmission and Antigen Presentation

Ben Berkhout, Maikel Boot, B. Berkhout, 2011, The Journal of Immunology.

Synergistic Activation of Human Immunodeficiency Virus Type 1 Promoter Activity by NF-κB and Inhibitors of Deacetylases: Potential Perspectives for the Development of Therapeutic Strategies

Ben Berkhout, Vincent Bours, B. Berkhout, 2002, Journal of Virology.

Nucleic Acids-Based Therapeutics in the Battle Against Pathogenic Viruses

Ben Berkhout, B. Berkhout, J. Haasnoot, 2009, Handbook of experimental pharmacology.

A miRNA-tRNA mix-up: tRNA origin of proposed miRNA

Ben Berkhout, B. Berkhout, J. Haasnoot, 2010 .

The HIV RNA setpoint theory revisited

Ben Berkhout, Ronald B Geskus, Laurence Meyer, 2007, Retrovirology.

Dimerization and Template Switching in the 5′ Untranslated Region between Various Subtypes of Human Immunodeficiency Virus Type 1

Ben Berkhout, Ebbe Sloth Andersen, Jørgen Kjems, 2003, Journal of Virology.

CRISPR-Cas9 Can Inhibit HIV-1 Replication but NHEJ Repair Facilitates Virus Escape

Ben Berkhout, A. Das, B. Berkhout, 2016, Molecular therapy : the journal of the American Society of Gene Therapy.

Silencing of HIV-1 with RNA interference: a multiple shRNA approach.

Ben Berkhout, Pavlina Konstantinova, Mustafa Ceylan, 2006, Molecular therapy : the journal of the American Society of Gene Therapy.

Molecular strategies to design an escape-proof antiviral therapy.

Ben Berkhout, B. Berkhout, R. Sanders, 2011, Antiviral research.

A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium

Ben Berkhout, Els Keyaerts, Marc Van Ranst, 2005, BMC infectious diseases.

Evolution rescues folding of human immunodeficiency virus-1 envelope glycoprotein GP120 lacking a conserved disulfide bond.

Alexandre M J J Bonvin, Ben Berkhout, B. Berkhout, 2008, Molecular biology of the cell.