D. Berger

发表

Post-embryonic remodeling of the C. elegans motor circuit

Aravinthan D. T. Samuel, J. Lichtman, R. Schalek, 2022, Current Biology.

Multi-layered maps of neuropil with segmentation-guided contrastive learning

Peter H. Li, Viren Jain, J. Lichtman, 2022, bioRxiv.

Saturated Reconstruction of a Volume of Neocortex

William R. Gray Roncal, Daniel R. Berger, Josh L. Morgan, 2015, Cell.

Connectomics of the Octopus vulgaris vertical lobe provides insight into conserved and novel principles of a memory acquisition network

B. Hochner, J. Lichtman, R. Schalek, 2022, bioRxiv.

The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus

Daniel R. Berger, Arthur W. Wetzel, Josh L. Morgan, 2016, Cell.

Connectomes across development reveal principles of brain maturation in C. elegans

Daniel R. Berger, Aravinthan D. T. Samuel, J. Lichtman, 2020, bioRxiv.

Neuromuscular connectomes across development reveal synaptic ordering rules

R. W. Draft, J. Livet, Ju Lu, 2021, bioRxiv.

Ultrastructural analysis of dendritic spine necks reveals a continuum of spine morphologies

R. Yuste, N. Kasthuri, J. Lichtman, 2021, bioRxiv.

Cell diversity and network dynamics in photosensitive human brain organoids

Daniel R. Berger, Evan Z. Macosko, Ziv M. Williams, 2017, Nature.

A connectomic study of a petascale fragment of human cerebral cortex

Peter H. Li, Viren Jain, J. Lichtman, 2021, bioRxiv.

Individual Oligodendrocytes Show Bias for Inhibitory Axons in the Neocortex.

Daniel R. Berger, Amanda J. Kedaigle, P. Arlotta, 2019, Cell reports.

Distinct Profiles of Myelin Distribution Along Single Axons of Pyramidal Neurons in the Neocortex

Daniel R. Berger, H. Seung, P. Arlotta, 2014, Science.

Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits

David Grant Colburn Hildebrand, Daniel R. Berger, Jeff W. Lichtman, 2014, Front. Neural Circuits.

VAST (Volume Annotation and Segmentation Tool): Efficient Manual and Semi-Automatic Labeling of Large 3D Image Stacks

H. Sebastian Seung, Daniel R. Berger, Jeff W. Lichtman, 2018, Front. Neural Circuits.

Pervasive Synaptic Branch Removal in the Mammalian Neuromuscular System at Birth

Daniel R. Berger, H. Seung, N. Kasthuri, 2012, Neuron.

Nanobody immunostaining for correlated light and electron microscopy with preservation of ultrastructure

J. Lichtman, R. Schalek, H. Ploegh, 2018, Nature Methods.

Crowdsourcing the creation of image segmentation algorithms for connectomics

Joachim M. Buhmann, Changming Sun, H. Sebastian Seung, 2015, Front. Neuroanat..

Boundary Learning by Optimization with Topological Constraints

H. Sebastian Seung, Moritz Helmstaedter, Narayanan Kasthuri, 2010, 2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition.

Nanobody immunostaining for correlated light and electron microscopy with preservation of ultrastructure

Richard Schalek, Hidde Ploegh, Jeff Lichtman, 2018, Nature Methods.

Multiplexed volumetric CLEM enabled by antibody derivatives provides new insights into the cytology of the mouse cerebellar cortex

Peter H. Li, Viren Jain, J. Lichtman, 2023, bioRxiv.

Extensive Soma-Soma Plate-Like Contact Sites (Ephapses) Connect Suprachiasmatic Nucleus Neurons

Daniel R. Berger, J. Lichtman, R. Schalek, 2022, bioRxiv.

Development of High-Throughput, High-Resolution 3D Reconstruction of Large-Volume Biological Tissue Using Automated Tape Collection Ultramicrotomy and Scanning Electron Microscopy

Srinivas C. Turaga, Erik D. Fagerholm, Daniel R. Berger, 2011, Microscopy and Microanalysis.

The open connectome project data cluster: scalable analysis and vision for high-throughput neuroscience

Alexander S. Szalay, Kwanghun Chung, Narayanan Kasthuri, 2013, SSDBM.

profiles of myelin along single axons of pyramidal neurons in the neocortex.

H. Seung, P. Arlotta, Hsu-hsin Chen, 2022 .

Multiplexed volumetric CLEM enabled by antibody derivatives provides new insights into the cytology of the mouse cerebellar cortex

Peter H. Li, Viren Jain, J. Lichtman, 2023, Research square.

Multiplexed volumetric CLEM enabled by antibody derivatives provides new insights into the cytology of the mouse cerebellar cortex

Peter H. Li, Viren Jain, J. Lichtman, 2023, bioRxiv.

RhoanaNet Pipeline: Dense Automatic Neural Annotation pdf

Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister, 2016, ArXiv.

Cell diversity and network dynamics in photosensitive human brain organoids

Evan Z. Macosko, Ziv M. Williams, S. Mccarroll, 2017, Nature.

Connectomes across development reveal principles of brain maturation

Aravinthan D. T. Samuel, J. Lichtman, N. Shavit, 2021, Nature.

Pervasive Synaptic Branch Removal in the Mammalian Neuromuscular System at Birth

H. Seung, N. Kasthuri, J. Lichtman, 2012, Neuron.

Pervasive Synaptic Branch Removal in the Mammalian Neuromuscular System at Birth

N. Kasthuri, J. Lichtman, R. Schalek, 2022 .

Post-embryonic maturation of the C. elegans motor circuit

Aravinthan D. T. Samuel, J. Lichtman, R. Schalek, 2022, bioRxiv.

A Scalable Staining Strategy for Whole-Brain Connectomics

J. Lichtman, R. Schalek, Yaron Meirovitch, 2023, bioRxiv.

Volumetric Exploitation of Synaptic Information using Context Localization and Evaluation pdf

Gregory D. Hager, Hanspeter Pfister, Narayanan Kasthuri, 2014, ArXiv.

Two Stream Active Query Suggestion for Active Learning in Connectomics

Hanspeter Pfister, Xueying Wang, Brian Matejek, 2020, ECCV.