A. V. van Dijk

发表

The tomato cytochrome P450 CYP712G1 catalyses the double oxidation of orobanchol en route to the rhizosphere signalling strigolactone, solanacol

H. Bouwmeester, M. Medema, R. van Velzen, 2022, The New phytologist.

Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility

Rolf Boelens, Marc van Dijk, R. Boelens, 2006, Nucleic acids research.

Data‐driven docking for the study of biomolecular complexes

Alexandre M J J Bonvin, Rolf Boelens, R. Boelens, 2005, The FEBS journal.

HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets

Alexandre M J J Bonvin, Mickaël Krzeminski, Sjoerd J de Vries, 2007, Proteins.

N-glycan occupancy of Arabidopsis N-glycoproteins.

A. D. V. van Dijk, A. America, J. Cordewener, 2013, Journal of proteomics.

Impaired peroxisome proliferator-activated receptor gamma function through mutation of a conserved salt bridge (R425C) in familial partial lipodystrophy.

A. Bonvin, A. D. V. van Dijk, E. Kalkhoven, 2007, Molecular endocrinology.

Designing Eukaryotic Gene Expression Regulation Using Machine Learning.

Dick de Ridder, Aalt D J van Dijk, Ronald P H de Jongh, 2020, Trends in biotechnology.

Distribution, position and genomic characteristics of crossovers in tomato recombinant inbred lines derived from an interspecific cross between Solanum lycopersicum and Solanum pimpinellifolium

D. de Ridder, S. Aflitos, S. Peters, 2017, The Plant journal : for cell and molecular biology.

Machine learning in plant science and plant breeding

G. Kootstra, W. Kruijer, A. D. V. van Dijk, 2020, iScience.

Domestication Shapes Recombination Patterns in Tomato

Roven Rommel Fuentes, D. de Ridder, S. Peters, 2021, Molecular biology and evolution.

WHISCY: What information does surface conservation yield? Application to data‐driven docking

A. Bonvin, S. D. de Vries, A. D. V. van Dijk, 2006, Proteins.

Solvated protein–protein docking using Kyte‐Doolittle‐based water preferences

Alexandre M J J Bonvin, Panagiotis L Kastritis, P. Kastritis, 2013, Proteins.

Sequence‐based analysis of protein degradation rates

D. de Ridder, Miguel Correa Marrero, A. V. van Dijk, 2017, Proteins.

N-glycoproteomics in plants: perspectives and challenges.

Antoine H P America, Jan H G Cordewener, Dirk Bosch, 2011, Journal of proteomics.

Data‐driven docking: HADDOCK's adventures in CAPRI

A M J J Bonvin, S J de Vries, H-X Zhou, 2005, Proteins.

Nuclear magnetic resonance-based modeling and refinement of protein three-dimensional structures and their complexes.

A. Bonvin, G. Fuentes, A. V. van Dijk, 2008, Methods in molecular biology.

Modeling protein-protein complexes involved in the cytochrome C oxidase copper-delivery pathway.

Ivano Bertini, Lucia Banci, Simone Ciofi-Baffoni, 2007, Journal of proteome research.

Explicit treatment of water molecules in data-driven protein-protein docking: the solvated HADDOCKing approach.

Alexandre M J J Bonvin, Panagiotis L Kastritis, P. Kastritis, 2012, Methods in molecular biology.

Various strategies of using residual dipolar couplings in NMR‐driven protein docking: Application to Lys48‐linked di‐ubiquitin and validation against 15N‐relaxation data

Alexandre M J J Bonvin, A. Bonvin, D. Fushman, 2005, Proteins.