Amos Bairoch

发表

UniPathway: a resource for the exploration and annotation of metabolic pathways

Anne Morgat, Eric Coissac, Elisabeth Coudert, 2011, Nucleic Acids Res..

The ENZYME data bank in 1999

Amos Bairoch, A. Bairoch, 1999, Nucleic Acids Res..

Deep Question Answering for protein annotation

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2015, Database J. Biol. Databases Curation.

Swiss-Prot: Juggling between evolution and stability

Amos Bairoch, Elisabeth Gasteiger, Brigitte Boeckmann, 2004, Briefings Bioinform..

UniProtKB/Swiss-Prot: New and Future Developments

Amos Bairoch, 2008, DILS.

InterPro : An integrated documentation resource for protein families , domains and functional sites The InterPro Consortium :

Alex Bateman, Rolf Apweiler, Beate Marx, 2005 .

IntAct: an open source molecular interaction database

Martin Vingron, David James Sherman, Alfonso Valencia, 2004, Nucleic Acids Res..

The 1999 SWISS-2DPAGE database update

Ron D. Appel, Amos Bairoch, Jean-Charles Sanchez, 2000, Nucleic Acids Res..

PROSITE, a protein domain database for functional characterization and annotation

Amos Bairoch, Christian J. A. Sigrist, Edouard De Castro, 2009, Nucleic Acids Res..

The SWISS-2DPAGE database: what has changed during the last year

Ron D. Appel, Amos Bairoch, Jean-Charles Sanchez, 1999, Nucleic Acids Res..

The Cellosaurus, a Cell-Line Knowledge Resource.

Amos Bairoch, A. Bairoch, 2018, Journal of biomolecular techniques : JBT.

The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995

Ron D. Appel, Amos Bairoch, Jean-Charles Sanchez, 1996, Nucleic Acids Res..

InterPro: the integrative protein signature database

Robert D. Finn, Cathy H. Wu, Alex Bateman, 2008, Nucleic Acids Res..

Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project.

Amos Bairoch, Frédérique Lisacek, Thibault Robin, 2018, Journal of proteome research.

ExPASy: the proteomics server for in-depth protein knowledge and analysis

Ron D. Appel, Amos Bairoch, Elisabeth Gasteiger, 2003, Nucleic Acids Res..

Converting neXtProt into Linked Data and nanopublications

Barend Mons, Amos Bairoch, Oliver Karch, 2015, Semantic Web.

Representation of functional information in the SWISS-PROT Data Bank

Rolf Apweiler, Amos Bairoch, V. L. Junker, 1999, Bioinform..

Infrastructure for the life sciences: design and implementation of the UniProt website

Peter B. McGarvey, Maria Jesus Martin, Amos Bairoch, 2009, BMC Bioinformatics.

Automated annotation of microbial proteomes in SWISS-PROT

Anne-Lise Veuthey, Elisabeth Coudert, Amos Bairoch, 2003, Comput. Biol. Chem..

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins

Amos Bairoch, Christian J. A. Sigrist, Edouard De Castro, 2006, Nucleic Acids Res..

A Preliminary Study on the Prediction of Human Protein Functions

Guido Bologna, Anne-Lise Veuthey, Amos Bairoch, 2011, IWINAC.

A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation

Amos Bairoch, Philipp Bucher, A. Bairoch, 1994, ISMB.

Recent improvements to the PROSITE database

Amos Bairoch, Christian J. A. Sigrist, Edouard De Castro, 2004, Nucleic Acids Res..

InterPro, progress and status in 2005

Cathy H. Wu, Alex Bateman, Rolf Apweiler, 2004, Nucleic Acids Res..

Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al

Rolf Apweiler, Amos Bairoch, Paul J. Kersey, 2001, Bioinform..

The PROSITE database, its status in 1995

Amos Bairoch, Philipp Bucher, Kay Hofmann, 1996, Nucleic Acids Res..

Triage by ranking to support the curation of protein interactions

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2017, Database J. Biol. Databases Curation.

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

Paul T. Groth, Barend Mons, Amos Bairoch, 2014, J. Web Semant..

New developments in the InterPro database

Robert D. Finn, Robert Petryszak, Cathy H. Wu, 2007, Nucleic Acids Res..

The PROSITE database

Amos Bairoch, Christian J. A. Sigrist, Edouard De Castro, 2005, Nucleic Acids Res..

The SWISS-PROT protein sequence data bank, recent developments

Amos Bairoch, Brigitte Boeckmann, A. Bairoch, 1993, Nucleic Acids Res..

ScanProsite: a reference implementation of a PROSITE scanning tool.

Amos Bairoch, Elisabeth Gasteiger, Alexandre Gattiker, 2002, Applied bioinformatics.

The neXtProt knowledgebase on human proteins: current status

Ying Zhang, Amos Bairoch, Alain Gateau, 2014, Nucleic Acids Res..

PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors

Amos Bairoch, Christian J. A. Sigrist, Nicolas Hulo, 2002, Briefings Bioinform..

IntEnz, the integrated relational enzyme database

Rolf Apweiler, Kristian B. Axelsen, Amos Bairoch, 2004, Nucleic Acids Res..

ViralZone: a knowledge resource to understand virus diversity

Amos Bairoch, Lydie Bougueleret, Ioannis Xenarios, 2010, Nucleic Acids Res..

Current status of the SWISS-2DPAGE database

Ron D. Appel, Amos Bairoch, Jean-Charles Sanchez, 1998, Nucleic Acids Res..

The ENZYME database in 2000

Amos Bairoch, A. Bairoch, 2000, Nucleic Acids Res..

UniProt: the Universal Protein knowledgebase

Cathy H. Wu, Maria Jesus Martin, Claire O'Donovan, 2004, Nucleic Acids Res..

The ENZYME data bank

Amos Bairoch, A. Bairoch, 1993, Nucleic Acids Res..

NEWT, a new taxonomy portal

Amos Bairoch, Wolfgang Fleischmann, Isabelle Phan, 2003, Nucleic Acids Res..

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot

Elisabeth Coudert, Guillaume Keller, Amos Bairoch, 2008, Nucleic Acids Res..

The Sulfinator: predicting tyrosine sulfation sites in protein sequences

Amos Bairoch, Elisabeth Gasteiger, Flavio Monigatti, 2002, Bioinform..

Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008

Amos Bairoch, Sarah Cohen Boulakia, Christine Froidevaux, 2008, BMC Bioinformatics.

ICEPO: the ion channel electrophysiology ontology

Amos Bairoch, Pascale Gaudet, Aurore Britan, 2016, Database J. Biol. Databases Curation.

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites

Alex Bateman, Rolf Apweiler, Henning Hermjakob, 2002, Briefings Bioinform..

neXtProt: a knowledge platform for human proteins

Amos Bairoch, Alain Gateau, Lydie Lane, 2011, Nucleic Acids Res..

The PROSITE database, its status in 1999

Amos Bairoch, Philipp Bucher, Kay Hofmann, 1999, Nucleic Acids Res..

Mass spectrometry in high-throughput proteomics: ready for the big time

John R Yates, Amos Bairoch, Ruedi Aebersold, 2010, Nature Methods.

SEQANALREF: a sequence analysis bibliographic reference databank

Amos Bairoch, A. Bairoch, 1991, Comput. Appl. Biosci..

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

Christian von Mering, Ron D. Appel, Evgeny M. Zdobnov, 2014, Nucleic Acids Res..

The PROSITE dictionary of sites and patterns in proteins, its current status

Amos Bairoch, A. Bairoch, 1993, Nucleic Acids Res..

The SWISS-PROT protein sequence data bank and its new supplement TREMBL

Rolf Apweiler, Amos Bairoch, A. Bairoch, 1996, Nucleic Acids Res..

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens

Andrew J. G. Simpson, Lloyd J. Old, Amos Bairoch, 2008, Nucleic Acids Res..

New Developments in the Linking of Biological Databases and Computer-Generation of Annotation

Claire O'Donovan, Rolf Apweiler, Amos Bairoch, 1996, German Conference on Bioinformatics.

The ENZYME data bank in 1995

Amos Bairoch, A. Bairoch, 1996, Nucleic Acids Res..

OpenFluDB, a database for human and animal influenza virus

Amos Bairoch, Lydie Bougueleret, Ioannis Xenarios, 2010, Database J. Biol. Databases Curation.

Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!

Amos Bairoch, A. Bairoch, 2000, Bioinform..

Managing the Data Explosion A Report on the HUPO‐PSI Workshop August 2008, Amsterdam, The Netherlands

Martin Eisenacher, Hans-Joachim Kraus, Amos Bairoch, 2009, Proteomics.

The PROSITE database, its status in 1997

Amos Bairoch, Philipp Bucher, Kay Hofmann, 1997, Nucleic Acids Res..

The PROSITE database, its status in 2002

Amos Bairoch, Christian J. A. Sigrist, Nicolas Hulo, 2002, Nucleic Acids Res..

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

Alex Bateman, Rolf Apweiler, Beate Marx, 2001, Nucleic Acids Res..

The InterPro Database, 2003 brings increased coverage and new features

Alex Bateman, Rolf Apweiler, Nicola J. Mulder, 2003, Nucleic Acids Res..

The SWISS-PROT protein sequence data bank and its supplement TrEMBL

Rolf Apweiler, Amos Bairoch, A. Bairoch, 1997, Nucleic Acids Res..

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

Amos Bairoch, Reinhard Dölz, Patrick Linder, 1994, Nucleic Acids Res..

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students

Amos Bairoch, Monique Zahn-Zabal, Lydie Lane, 2021, Database J. Biol. Databases Curation.

Plant Protein Annotation in the UniProt Knowledgebase1

Cathy H. Wu, Rolf Apweiler, Michel Schneider, 2005, Plant Physiology.

Proposals for the naming of chloroplast genes. III. Nomenclature for open reading frames encoded in chloroplast genomes

Amos Bairoch, A. Bairoch, Richard B. Hallick, 1994, Plant Molecular Biology Reporter.

Annotation of functional impact of voltage‐gated sodium channel mutations

Amos Bairoch, Mathieu Schaeffer, Pascale Gaudet, 2017, Human mutation.

Protein sequence databases.

Cathy H. Wu, Rolf Apweiler, Amos Bairoch, 2004, Current opinion in chemical biology.

Detailed peptide characterization using PEPTIDEMASS – a World‐Wide‐Web‐accessible tool

Amos Bairoch, Elisabeth Gasteiger, D. Hochstrasser, 1997, Electrophoresis.

Exploring the Uncharacterized Human Proteome Using neXtProt.

Amos Bairoch, Alain Gateau, Lydie Lane, 2018, Journal of proteome research.

Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase.

Amos Bairoch, Florence Jungo, A. Bairoch, 2005, Toxicon : official journal of the International Society on Toxinology.

Post‐translational modifications: A challenge for proteomics and bioinformatics

Amos Bairoch, Ron D Appel, R. Appel, 2004, Proteomics.

A large-scale protein-function database.

Christoph Steinbeck, Rolf Apweiler, Amos Bairoch, 2010, Nature chemical biology.

The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program.

Michel Schneider, Amos Bairoch, Damien Lieberherr, 2009, Journal of proteomics.

Protein variety and functional diversity: Swiss-Prot annotation in its biological context.

Marie-Claude Blatter, Amos Bairoch, Lydie Lane, 2005, Comptes rendus biologies.

Creating a specialist protein resource network

Neil D. Rawlings, Alex Bateman, Bernard Henrissat, 2015 .

The neXtProt knowledgebase in 2020: data, tools and usability improvements

Amos Bairoch, Mathieu Schaeffer, Alain Gateau, 2019, Nucleic Acids Res..

Human liver protein map: A reference database established by microsequencing and gel comparison

Amos Bairoch, Florence Ravier, Christian Pasquali, 1992, Electrophoresis.

The Swiss-Prot Protein Sequence Data Bank User Manual

Amos Bairoch, 1997 .

A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells

Amos Bairoch, Helen Parkinson, Nancy Mah, 2018, Stem cell reports.

Plasma and red blood cell protein maps: Update 1993

Amos Bairoch, Olivier Golaz, Christian Pasquali, 1993, Electrophoresis.

A novel zinc‐binding motif found in two ubiquitous deaminase families

Amos Bairoch, Stewart Buskirk, A. Bairoch, 1994, Protein science : a publication of the Protein Society.

FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification

Amos Bairoch, Elisabeth Gasteiger, Alexandre Gattiker, 2002, Proteomics.

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins.

Amos Bairoch, Emma Lundberg, Lydie Lane, 2014, Journal of proteome research.

Proto-vav and gene expression

Amos Bairoch, Mark S. Boguski, George S. Michaels, 1992, Nature.

DERA is the human deoxyribose phosphate aldolase and is involved in stress response.

Amos Bairoch, Lydie Lane, Camille Mary, 2014, Biochimica et biophysica acta.