Hélène Lopez-Maestre

Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids

C. Vieira, S. Chambeyron, B. Mugat, 2017, Genome biology and evolution.

Identification of misexpressed genetic elements in hybrids between Drosophila-related species

C. Vieira, S. Chambeyron, B. Mugat, 2017, Scientific Reports.

TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes

Laurent Modolo, Emmanuelle Lerat, Hélène Lopez-Maestre, 2016, Nucleic acids research.

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

Vincent Miele, Camille Marchet, Marie-France Sagot, 2017, Algorithms for Molecular Biology.

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

Franck Picard, Marie-France Sagot, Camille Marchet, 2016, Nucleic acids research.

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

G. Sacomoto, M. Sagot, V. Miele, 2017, Algorithms for Molecular Biology.

Proceedings of the SeqBio 2015 workshop: String algorithms for bioinformatics

T. Lecroq, G. Fertin, R. Chikhi, 2021 .