Savvas Polydorides

Monte carlo simulations of proteins at constant pH with generalized born solvent, flexible sidechains, and an effective dielectric boundary

Savvas Polydorides, Thomas Simonson, T. Simonson, 2013, J. Comput. Chem..

Computational protein design: The proteus software and selected applications

Savvas Polydorides, Thomas Simonson, Najette Amara, 2013, J. Comput. Chem..

Simple models for nonpolar solvation: Parameterization and testing

Savvas Polydorides, Thomas Simonson, Georgios Archontis, 2017, J. Comput. Chem..

Comparing pairwise‐additive and many‐body generalized Born models for acid/base calculations and protein design

Savvas Polydorides, Thomas Simonson, David Mignon, 2017, J. Comput. Chem..

Proteus and the Design of Ligand Binding Sites.

Savvas Polydorides, Thomas Simonson, David Mignon, 2016, Methods in molecular biology.

Predicting the acid/base behavior of proteins: a constant-pH Monte Carlo approach with generalized born solvent.

Savvas Polydorides, Thomas Simonson, Alexey Aleksandrov, 2010, The journal of physical chemistry. B.