Michael Riffle

发表

Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences

Daniel Jaschob, Trisha N Davis, Michael Riffle, 2015, BMC Research Notes.

Kojak: efficient analysis of chemically cross-linked protein complexes.

Michael J MacCoss, Alex Zelter, Trisha N Davis, 2015, Journal of proteome research.

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

William Stafford Noble, William S Noble, Damon H May, 2016, The ISME Journal.

Proteomics data repositories

Michael Riffle, Jimmy K Eng, J. Eng, 2009, Proteomics.

ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data

Daniel Jaschob, Alex Zelter, Trisha N. Davis, 2016, Journal of proteome research.

Survey of metaproteomics software tools for functional microbiome analysis

Thilo Muth, Subina Mehta, Caleb Easterly, 2020, PloS one.

Determining Protein Complex Structures Based on a Bayesian Model of in Vivo Förster Resonance Energy Transfer (FRET) Data*

Massimiliano Bonomi, Andrej Sali, Daniel Jaschob, 2014, Molecular & Cellular Proteomics.

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling

Massimiliano Bonomi, Michael J MacCoss, Daniel Jaschob, 2015, Nature Communications.

SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences

Daniel Jaschob, Trisha N Davis, Michael Riffle, 2013, BMC Research Notes.

The Proteome Folding Project: proteome-scale prediction of structure and function.

Lars Malmström, Richard Bonneau, Trisha N Davis, 2011, Genome research.

Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes

William Stafford Noble, William S Noble, Damon H May, 2019, The ISME Journal.

The Ndc80 complex bridges two Dam1 complex rings

Michael J MacCoss, Alex Zelter, Trisha N Davis, 2017, eLife.

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

William Stafford Noble, Jon Wakefield, Sara J Cooper, 2013, Genome research.