Yibing Shan

发表

Assessing the Accuracy of Two Enhanced Sampling Methods Using EGFR Kinase Transition Pathways: The Influence of Collective Variable Choice.

David E Shaw, Albert C Pan, Thomas M Weinreich, 2014, Journal of chemical theory and computation.

Anton, a special-purpose machine for molecular dynamics simulation

John L. Klepeis, J. P. Grossman, Brian Towles, 2007, ISCA '07.

Millisecond-scale molecular dynamics simulations on Anton

John L. Klepeis, Kresten Lindorff-Larsen, Edmond Chow, 2009, Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis.

Membrane Interaction of Bound Ligands Contributes to the Negative Binding Cooperativity of the EGF Receptor

David E. Shaw, Anton Arkhipov, Yibing Shan, 2014, PLoS Comput. Biol..

Molecular dynamics - Scalable algorithms for molecular dynamics simulations on commodity clusters

John L. Klepeis, Edmond Chow, David E. Shaw, 2006, SC.

Automated Event Detection and Activity Monitoring in Long Time-Scale Molecular Dynamics

David E. Shaw, Ron O. Dror, Willy Wriggers, 2009 .

High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulation

John L. Klepeis, J. P. Grossman, David E. Shaw, 2008, 2008 IEEE 14th International Symposium on High Performance Computer Architecture.

Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations.

Stefano Piana, Willy Wriggers, Michael P Eastwood, 2009, Journal of chemical theory and computation.

A dynamically coupled allosteric network underlies binding cooperativity in Src kinase

Yibing Shan, Eric T. Kim, David E. Shaw, 2015, Nature Communications.

Structural analysis of the EGFR/HER3 heterodimer reveals the molecular basis for activating HER3 mutations

Venkatesh Mysore, Yibing Shan, Lijun Liu, 2014, Science Signaling.

Molecular basis for pseudokinase-dependent autoinhibition of JAK2 tyrosine kinase

Yibing Shan, Eric T. Kim, S. Hubbard, 2014, Nature Structural &Molecular Biology.

Crystal structures of the Jak2 pseudokinase domain and the pathogenic mutant V617F

Yibing Shan, Stevan R. Hubbard, David E. Shaw, 2012, Nature Structural &Molecular Biology.

Equally potent inhibition of c-Src and Abl by compounds that recognize inactive kinase conformations.

John Kuriyan, Yibing Shan, Dustin J Maly, 2009, Cancer research.

EGFR oligomerization organizes kinase-active dimers into competent signalling platforms

Anton Arkhipov, Martyn D Winn, Alireza Lajevardipour, 2016, Nature Communications.

Architecture and Membrane Interactions of the EGF Receptor

Anton Arkhipov, John Kuriyan, Yibing Shan, 2013, Cell.

Structural analysis of the catalytically inactive kinase domain of the human EGF receptor 3

John Kuriyan, Yibing Shan, D. Shaw, 2009, Proceedings of the National Academy of Sciences.