Konrad Scheffler

发表

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

Ben Murrell, Tulio de Oliveira, Christopher J. Seebregts, 2012, PLoS Comput. Biol..

Phoneme-based topic spotting in conversational speech

Konrad Scheffler, 1997 .

Workshop: Error correction, noise filtering, and phylogenetic analysis of HIV sequences using the 454 platform

Sergei L. Kosakovsky Pond, Konrad Scheffler, Douglas D. Richman, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

IDEPI: Rapid Prediction of HIV-1 Antibody Epitopes and Other Phenotypic Features from Sequence Data Using a Flexible Machine Learning Platform

Ben Murrell, Sergei L. Kosakovsky Pond, Konrad Scheffler, 2014, PLoS Comput. Biol..

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions

Konrad Scheffler, Giuseppe Narzisi, Dorothea Emig-Agius, 2019, bioRxiv.

Robust inference of positive selection from recombining coding sequences

Konrad Scheffler, Darren P. Martin, Cathal Seoighe, 2006, Bioinform..

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions

Konrad Scheffler, Giuseppe Narzisi, Dorothea Emig-Agius, 2019, Bioinformatics.

Probabilistic simulation of human-machine dialogues

Konrad Scheffler, Steve J. Young, 2000, 2000 IEEE International Conference on Acoustics, Speech, and Signal Processing. Proceedings (Cat. No.00CH37100).

Automatic learning of dialogue strategy using dialogue simulation and reinforcement learning

Steve Young, Konrad Scheffler, S. Young, 2002 .

Very Low Power to Detect Asymmetric Divergence of Duplicated Genes

Konrad Scheffler, Cathal Seoighe, C. Seoighe, 2005, Comparative Genomics.

Simulation of human-machine dialogues

Steve Young, Konrad Scheffler, S. Young, 1999 .

Models of coding sequence evolution

Konrad Scheffler, Wayne Delport, Cathal Seoighe, 2008, Briefings Bioinform..

Gene expression Maximum likelihood inference of imprinting and allele-specific expression from EST data

Konrad Scheffler, Victoria Nembaware, Cathal Seoighe, 2006 .

Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial

Raphael Gottardo, Tomer Hertz, Sergei L. Kosakovsky Pond, 2015, PLoS Comput. Biol..

CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences

Sergei L. Kosakovsky Pond, Konrad Scheffler, Michael B. Gravenor, 2010, PLoS Comput. Biol..

Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission

Konrad Scheffler, Cathal Seoighe, C. Seoighe, 2009, Virology Journal.

Evolutionary fingerprinting of genes.

Konrad Scheffler, Art F Y Poon, Michael B Gravenor, 2010, Molecular biology and evolution.

RELAX: detecting relaxed selection in a phylogenetic framework.

Ben Murrell, Konrad Scheffler, Sergei L. Kosakovsky Pond, 2014, Molecular biology and evolution.

Social and Genetic Networks of HIV-1 Transmission in New York City

Ben Murrell, Konrad Scheffler, Joel O. Wertheim, 2017, PLoS pathogens.

Epitope Discovery with Phylogenetic Hidden Markov Models

Konrad Scheffler, Cathal Seoighe, C. Seoighe, 2010, Molecular biology and evolution.

Non-Negative Matrix Factorization for Learning Alignment-Specific Models of Protein Evolution

Ben Murrell, Konrad Scheffler, Daniel Kaliski, 2011, PloS one.

Strelka2: Fast and accurate variant calling for clinical sequencing applications

Konrad Scheffler, Peter Krusche, Doruk Beyter, 2017, bioRxiv.

Compartmentalized HIV rebound in the central nervous system after interruption of antiretroviral therapy

Konrad Scheffler, Ronald J. Ellis, Sergei L. Kosakovsky Pond, 2016, Virus evolution.

Gene-wide identification of episodic selection.

Ben Murrell, Konrad Scheffler, Steven Weaver, 2015, Molecular biology and evolution.