Zemin Ning

发表

scanPAV: a pipeline for extracting presence–absence variations in genome pairs

Francesca Giordano, Maximilian R. Stammnitz, Elizabeth P. Murchison, 2018, Bioinform..

William Spooner, Steven Leonard, Zemin Ning, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

Kai Ye, Quan Long, Marcel H. Schulz, 2009, Bioinform..

De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms

Jing Li, Richard Durbin, Thomas M. Keane, 2017, Scientific Reports.

SSAHA: A Fast Search Method for Large

Anthony J. Cox, Zemin Ning, James C. Mullikin, 2006 .

The SSAHA trace server

William Spooner, Steven Leonard, Zemin Ning, 2004 .

ssahaSNP - a polymorphism detection tool on a whole genome scale

Mario Cáccamo, Zemin Ning, James C. Mullikin, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data

Kai Ye, Peter A. C. 't Hoen, Eric-Wubbo Lameijer, 2012, Bioinform..

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Inanç Birol, Dominique Lavenier, Hamidreza Chitsaz, 2013, GigaScience.

Oxford Nanopore MinION Sequencing and Genome Assembly

Francesca Giordano, Zemin Ning, Hengyun Lu, 2016, Genom. Proteom. Bioinform..

HI: haplotype improver using paired-end short reads

Zemin Ning, Quan Long, Chris Tyler-Smith, 2009, Bioinform..

Efficient iterative Hi-C scaffolder based on N-best neighbors

Guohua Wang, Richard Durbin, Dengfeng Guan, 2021, BMC Bioinform..

The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)

Ying Lu, Yingli Liu, Yiqi Lu, 2013, Nature Genetics.

The piggyBac Transposon Displays Local and Distant Reintegration Preferences and Can Cause Mutations at Noncanonical Integration Sites

Kosuke Yusa, Allan Bradley, Zemin Ning, 2013, Molecular and Cellular Biology.

SMALT – A new mapper for DNA sequencing reads

Zemin Ning, Z. Ning, H. Ponstingl, 2010 .

Next-generation sequencing and large genome assemblies.

German Tischler, Zemin Ning, Z. Ning, 2012, Pharmacogenomics.

Assessing the gene space in draft genomes

Keith Bradnam, Thomas M. Keane, Zemin Ning, 2008, Nucleic acids research.

Mobilization of giant piggyBac transposons in the mouse genome

Kosuke Yusa, Allan Bradley, Zemin Ning, 2011, Nucleic acids research.

PoolHap: Inferring Haplotype Frequencies from Pooled Samples by Next Generation Sequencing

Kai Ye, Zemin Ning, Quan Long, 2011, PloS one.

Transmissible Dog Cancer Genome Reveals the Origin and History of an Ancient Cell Lineage

Peter J. Campbell, Michael R. Stratton, Robin A. Weiss, 2014, Science.

The opium poppy genome and morphinan production

Yi Li, Kai Ye, Zemin Ning, 2018, Science.

The Schistosoma japonicum genome reveals features of host–parasite interplay

Wei Huang, Zheng Feng, Shengyue Wang, 2009, Nature.

The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation

Qiong Luo, Cheng Yang, Ying Lu, 2015, Nature Genetics.

The Origins and Vulnerabilities of Two Transmissible Cancers in Tasmanian Devils

Stacey Price, Ludmil B. Alexandrov, Fengtang Yang, 2018, Cancer cell.

The genome of the blood fluke Schistosoma mansoni

John P. Overington, Adhemar Zerlotini, Anna V. Protasio, 2009, Nature.

Towards complete and error-free genome assemblies of all vertebrate species

Sergey Koren, Adam M. Phillippy, Eugene W. Myers, 2020, Nature.

Aging as Accelerated Accumulation of Somatic Variants: Whole-Genome Sequencing of Centenarian and Middle-Aged Monozygotic Twin Pairs

Jeanine J. Houwing-Duistermaat, Victor Guryev, Eric-Wubbo Lameijer, 2013, Twin Research and Human Genetics.

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

Carolyn Tregidgo, Albert J. Vilella, Peter J. Campbell, 2012, Cell.

A conditional piggyBac transposition system for genetic screening in mice identifies oncogenic networks in pancreatic cancer

Christian Veltkamp, Christian Pilarsky, Robert Grützmann, 2014, Nature Genetics.

Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels

Heng Li, Klaudia Walter, Steve D. M. Brown, 2009, Genome Biology.