S. Oyola

发表

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

John C. Tan, Anna E. Jeffreys, J. Rayner, 2012, Nature.

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes

D. Kwiatkowski, H. Swerdlow, D. Turner, 2012, BMC Genomics.

Functional Analysis of Leishmania Cyclopropane Fatty Acid Synthetase

Terry K. Smith, Paul M. Kaye, Jeremy C. Mottram, 2012, PloS one.

Comparative genomic analysis of three Leishmania species that cause diverse human disease

Brian White, Arnaud Kerhornou, Michael A Quail, 2007, Nature Genetics.

A Genome Wide Association Study of Plasmodium falciparum Susceptibility to 22 Antimalarial Drugs in Kenya

D. Kwiatkowski, K. Rockett, M. Manske, 2014, PloS one.

Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals

Sylvain Gandon, Ulrike Böhme, Sascha Steinbiss, 2018, Genome research.

Complete avian malaria parasite genomes reveal host-specific parasite evolution in birds and mammals

M. Berriman, C. Newbold, J. Cotton, 2016, bioRxiv.

Optimal enzymes for amplifying sequencing libraries

Michael A Quail, Thomas D Otto, Simon R Harris, 2011, Nature Methods.

Genome Scan for Variable Genes Involved in Environmental Adaptations of Nubian Ibex

Jean-Baka Domelevo Entfellner, J. Mutuku, A. Kotzé, 2021, Journal of Molecular Evolution.

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

Gilean McVean, Alistair Miles, Susana Campino, 2013, Nature Genetics.

Genetic architecture of artemisinin-resistant Plasmodium falciparum

Gilean McVean, Chris C A Spencer, Mehul Dhorda, 2015, Nature Genetics.

Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification

D. Kwiatkowski, K. Rockett, M. Manske, 2016, bioRxiv.

Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria

M. Berriman, C. Newbold, T. Otto, 2018, Nature Microbiology.

Title: Genomes of all known members of a Plasmodium subgenus reveal paths to 1 virulent human malaria

C. Newbold, T. Otto, M. Sanders, 2018 .

Genomes of an entire Plasmodium subgenus reveal paths to virulent human malaria

M. Berriman, C. Newbold, T. Otto, 2016, bioRxiv.

A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA

Fiona J. Stewart, Eileen T. Dimalanta, Erbay Yigit, 2013, PloS one.

A kinetoplastid BRCA2 interacts with DNA replication protein CDC45.

S. Melville, F. Bringaud, Samuel O. Oyola, 2009, International journal for parasitology.

Whole metagenome sequencing of cecum microbiomes in Ethiopian indigenous chickens from two different altitudes reveals antibiotic resistance genes.

O. Hanotte, Jong-Eun Park, D. Lim, 2019, Genomics.

Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification

Mihir Kekre, Dominic P. Kwiatkowski, Magnus Manske, 2016, Malaria Journal.

Imported SARS-COV-2 Variants of Concern Drove Spread of Infections Across Kenya During the Second Year of the Pandemic

V. Nene, S. Kariuki, Stephanie N. Seifert, 2022, medRxiv.

Profiling of RNA Viruses in Biting Midges (Ceratopogonidae) and Related Diptera from Kenya Using Metagenomics and Metabarcoding Analysis

R. Sang, W. Bulimo, Samuel O. Oyola, 2021, mSphere.

Genome-Wide Analysis of Nubian Ibex Reveals Candidate Positively Selected Genes That Contribute to Its Adaptation to the Desert Environment

M. Agaba, Samuel O Oyola, A. Kotzé, 2020, Animals : an open access journal from MDPI.

Identification and distribution of pathogens coinfecting with Brucella spp., Coxiella burnetii and Rift Valley fever virus in humans, livestock and wildlife

Samuel O Oyola, B. Bett, Andrew W Bartlow, 2022, Zoonoses and public health.

Using Multiplex Amplicon PCR Technology to Efficiently and Timely Generate Rift Valley Fever Virus Sequence Data for Genomic Surveillance

Rachael W. Gachogo, R. Sang, A. Christoffels, 2023, Viruses.

Efficient Depletion of Host DNA Contamination in Malaria Clinical Sequencing

D. Kwiatkowski, H. Swerdlow, M. Quail, 2012, Journal of Clinical Microbiology.

Optimized Whole-Genome Amplification Strategy for Extremely AT-Biased Template

D. Kwiatkowski, M. Manske, M. Berriman, 2014, DNA research : an international journal for rapid publication of reports on genes and genomes.

Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment

R. Sang, A. Christoffels, T. de Oliveira, 2022, BMC genomics.

The genomic epidemiology of SARS-CoV-2 variants of concern in Kenya

A. Rambaut, M. Cotten, C. Agoti, 2022, medRxiv.

Whole-genome sequencing of SARS-CoV-2 reveals diverse mutations in circulating Alpha and Delta variants during the first, second, and third waves of COVID-19 in South Kivu, east of the Democratic Republic of the Congo

D. Mukwege, Samuel O. Oyola, T. Kashosi, 2022, International Journal of Infectious Diseases.

Human candidate gene polymorphisms and risk of severe malaria in children in Kilifi, Kenya: a case-control association study

Vysaul B. Nyirongo, Anna E. Jeffreys, M. Pirinen, 2018, The Lancet. Haematology.

Molecular Epidemiology and Diversity of SARS-CoV-2 in Ethiopia, 2020–2022

A. Desta, T. de Oliveira, J. Giandhari, 2023, medRxiv.

Rapid CRISPR/Cas9 Editing of Genotype IX African Swine Fever Virus Circulating in Eastern and Central Africa

S. Vashee, W. Fuchs, L. Steinaa, 2021, Frontiers in Genetics.