Feichen Shen

发表

Mohammad Hassan Murad, Ding cheng Li, Zhen Wang, 2014 .

A pervasive framework for real-time activity patterns of mobile users

Feichen Shen, 2015, 2015 IEEE International Conference on Pervasive Computing and Communication Workshops (PerCom Workshops).

Rare disease knowledge enrichment through a data-driven approach

Feichen Shen, Yiqing Zhao, Liwei Wang, 2019, BMC Medical Informatics and Decision Making.

Leveraging a Data-Driven Strategy to Enrich Rare Disease Knowledge

Hongfang Liu, Feichen Shen, Yiqing Zhao, 2019, AMIA.

A Review of the End-to-End Methodologies for Clinical Concept Extraction

Hongfang Liu, Feichen Shen, Yiqing Zhao, 2019 .

Predicting Practice Setting Using Topic Modeling

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, 2018 IEEE International Conference on Healthcare Informatics Workshop (ICHI-W).

Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity

Gil Alterovitz, Matvey B Palchuk, Feichen Shen, 2020, J. Am. Medical Informatics Assoc..

BioCreative/OHNLP Challenge 2018

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, BCB.

Subgrouping Rare Disease Patients Leveraging the Human Phenotype Ontology Embeddings

Feichen Shen, Hongfang Liu, Andrew Wen, 2020, 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS).

Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature

Hongfang Liu, Fei Liu, Feichen Shen, 2017, BCB.

Phenotyping on EHR Data Using OWL and Semantic Web Technologies

Cui Tao, Hongfang Liu, Dingcheng Li, 2013, ICSH.

Towards a multi-level framework for supporting systematic review — A pilot study

Zhen Wang, Hongfang Liu, Dingcheng Li, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data

Chen Wang, Hongfang Liu, Feichen Shen, 2019, JAMIA open.

PEMAR: A pervasive middleware for activity recognition with smart phones

Yugyung Lee, Feichen Shen, Mayanka Chandrashekar, 2015, 2015 IEEE International Conference on Pervasive Computing and Communication Workshops (PerCom Workshops).

An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling

Kui Wang, Feichen Shen, Guoqian Jiang, 2019, J. Heal. Informatics Res..

Extracting chemical–protein relations using attention-based neural networks

Hongfang Liu, K. E. Ravikumar, Feichen Shen, 2018, Database J. Biol. Databases Curation.

Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology

Hongfang Liu, Liwei Wang, Feichen Shen, 2020, MedInfo.

Recommending Education Materials for Diabetic Questions Using Information Retrieval Approaches

Hongfang Liu, Liwei Wang, Feichen Shen, 2017, AMIA.

Implementation of a Cohort Retrieval System for Clinical Data Repositories Using the Observational Medical Outcomes Partnership Common Data Model: Proof-of-Concept System Validation

Feichen Shen, Sijia Liu, Hongfang Liu, 2020, JMIR medical informatics.

The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records

Özlem Uzuner, Feichen Shen, Yanshan Wang, 2020, J. Am. Medical Informatics Assoc..

Ensembles of natural language processing systems for portable phenotyping solutions

Hongfang Liu, Chunhua Weng, Cong Liu, 2019, J. Biomed. Informatics.

Semantic Representations of Medical Terms: A Comparison Study of Word Embeddings Trained on Clinical Notes and PubMed Articles

Hongfang Liu, Liwei Wang, Feichen Shen, 2017, AMIA.

Journal of Biomedical Informatics

Hongfang Liu, Liwei Wang, Feichen Shen, 2022 .

Accelerating Rare Disease Diagnosis with Collaborative Filtering

Hongfang Liu, Liwei Wang, Feichen Shen, 2017, AMIA.

Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, 2018 IEEE International Conference on Healthcare Informatics Workshop (ICHI-W).

Annotating Cohort Data Elements with OHDSI Common Data Model to Promote Research Reproducibility

Jennifer St Sauver, Hongfang Liu, Henry Wang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

On Mapping Textual Queries to a Common Data Model

Hongfang Liu, Stephen T. Wu, Feichen Shen, 2017, 2017 IEEE International Conference on Healthcare Informatics (ICHI).

Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms of Chronic Kidney Disease Complicated by Metabolic Syndrome

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Content Analysis of Free-Text Family History

Hongfang Liu, Liwei Wang, Feichen Shen, 2017, CRI.

MayoNLP at SemEval 2017 Task 10: Word Embedding Distance Pattern for Keyphrase Classification in Scientific Publications

Hongfang Liu, Feichen Shen, Vipin Chaudhary, 2017, SemEval@ACL.

A Resource for Clinical Semantic Textual Similarity

Hongfang Liu, Feichen Shen, Yanshan Wang, 2017, AMIA.

Collaborative Mobile-Cloud Computing for Civil Infrastructure Condition Inspection

Yugyung Lee, Feichen Shen, ZhiQiang Chen, 2015, J. Comput. Civ. Eng..

Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis

Hongfang Liu, Liwei Wang, Feichen Shen, 2017, AMIA.

An integrative computational approach to identify disease-specific networks from PubMed literature information

Cui Tao, Hongfang Liu, Dingcheng Li, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Constructing co-occurrence network embeddings to assist association extraction for COVID-19 and other coronavirus infectious diseases

Feichen Shen, Guoqian Jiang, Hongfang Liu, 2020, J. Am. Medical Informatics Assoc..

HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology

Feichen Shen, Sijia Liu, Liwei Wang, 2019, J. Biomed. Informatics.

Need of informatics in designing interoperable clinical registries

Hongfang Liu, Feichen Shen, Majid Rastegar-Mojarad, 2017, Int. J. Medical Informatics.

A clinical text classification paradigm using weak supervision and deep representation

Hongfang Liu, Sunghwan Sohn, Liwei Wang, 2019, BMC Medical Informatics and Decision Making.

Systematic identification of latent disease-gene associations from PubMed articles

Cui Tao, Hongfang Liu, Dingcheng Li, 2018, PloS one.

Populating Physician Biographical Pages Based on EMR Data

Hongfang Liu, Feichen Shen, Sijia Liu, 2017, CRI.

Using Human Phenotype Ontology for Phenotypic Analysis of Clinical Notes

Hongfang Liu, Liwei Wang, Feichen Shen, 2017, MedInfo.

Resolution of Chemical Disease Relations with Diverse Features and Rules

Hongfang Liu, Dingcheng Li, Feichen Shen, 2015 .

MedSTS: a resource for clinical semantic textual similarity

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, Language Resources and Evaluation.

MedTQ: Dynamic Topic Discovery and Query Generation for Medical Ontologies pdf

Yugyung Lee, Feichen Shen, F. Shen, 2018, ArXiv.

Reducing the Screening Burden of Systematic Review with a Multiple-level Relevance Ranking System

Zhen Wang, Hongfang Liu, Dingcheng Li, 2014, AMIA.

Enrich Rare Disease Phenotypic Characterizations via a Graph Convolutional Network Based Recommendation System

Feichen Shen, Hongfang Liu, Andrew Wen, 2020, 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS).

Special Issue on Healthcare Knowledge Discovery and Management

Feichen Shen, Vipin Chaudhary, Che Ngufor, 2019, J. Heal. Informatics Res..

Situation Aware Mobile Apps Framework

Feichen Shen, Feichen Shen, 2012 .

SAMAF: Situation aware mobile apps framework

Yugyung Lee, Feichen Shen, 2015, 2015 IEEE International Conference on Pervasive Computing and Communication Workshops (PerCom Workshops).

Comparisons of Graph Neural Networks on Cancer Classification Leveraging a Joint of Phenotypic and Genetic Features pdf

Feichen Shen, Hongfang Liu, Andrew Wen, 2021, ArXiv.

Utilization of Electronic Medical Records and Biomedical Literature to Support the Diagnosis of Rare Diseases Using Data Fusion and Collaborative Filtering Approaches

Hongfang Liu, Feichen Shen, Yanshan Wang, 2018, JMIR medical informatics.

Detection of Surgical Site Infection Utilizing Automated Feature Generation in Clinical Notes

Hongfang Liu, Sunghwan Sohn, James M. Naessens, 2018, Journal of Healthcare Informatics Research.

A Comparison of Word Embeddings for the Biomedical Natural Language Processing

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, J. Biomed. Informatics.

Combining Knowledge and Data Driven Insights to Facilitate the Differential Diagnosis of Rare Diseases

Hongfang Liu, Feichen Shen, Hongfang Liu, 2018, American Medical Informatics Association Annual Symposium.

A Text-Mining Framework for Supporting Systematic Reviews.

Hongfang Liu, Dingcheng Li, Sunghwan Sohn, 2016, American journal of information management.

Evaluating the Impact of Dictionary Updates on Automatic Annotations Based on Clinical NLP Systems.

Sunghwan Sohn, Feichen Shen, Liwei Wang, 2019, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Knowledge Discovery from Biomedical Ontologies in Cross Domains

Yugyung Lee, Feichen Shen, F. Shen, 2016, PloS one.

Medical concept intersection between outside medical records and consultant notes: A case study in transferred cardiovascular patients

Hongfang Liu, Feichen Shen, Yanshan Wang, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model pdf

Hongfang Liu, Liwei Wang, Feichen Shen, 2019, ArXiv.

A Deep Representation Empowered Distant Supervision Paradigm for Clinical Information Extraction pdf

Hongfang Liu, Sunghwan Sohn, Liwei Wang, 2018, ArXiv.

Data-driven Sublanguage Analysis for Cancer Genomics Knowledge Modeling: Applications in Mining Oncological Genetics Information from Patients' Genetic Reports.

Feichen Shen, Yiqing Zhao, Hongfang Liu, 2020, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

A Deep Profiling and Visualization Framework to Audit Clinical Assessment Variation

Feichen Shen, Hongfang Liu, Andrew Wen, 2020, 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS).

Incorporating Knowledge-Driven Insights into a Collaborative Filtering Model to Facilitate the Differential Diagnosis of Rare Diseases

Hongfang Liu, Feichen Shen, Hongfang Liu, 2018, AMIA.

Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data

Yugyung Lee, Cui Tao, Hongfang Liu, 2014, IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI).

Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data

Hongfang Liu, Sunghwan Sohn, Feichen Shen, 2018, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

SMARTSPACE: Multiagent Based Distributed Platform for Semantic Service Discovery

Yugyung Lee, Feichen Shen, Anoop Aroor, 2014, IEEE Transactions on Systems, Man, and Cybernetics: Systems.

Integrating word embedding neural networks with PubMed abstracts to extract keyword proximity of chronic diseases

Feichen Shen, Hongfang Liu, Yanshan Wang, 2019, 2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI).

BmQGen: Biomedical query generator for knowledge discovery

Yugyung Lee, Hongfang Liu, Sunghwan Sohn, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Towards Semantic Big Graph Analytics for Cross-Domain Knowledge Discovery pdf

Feichen Shen, F. Shen, 2019, ArXiv.

Development of Clinical Concept Extraction Applications: A Methodology Review pdf

Hongfang Liu, Feichen Shen, Yiqing Zhao, 2019, ArXiv.

Mining Hierarchies and Similarity Clusters from Value Set Repositories

Hongfang Liu, Feichen Shen, Guoqian Jiang, 2017, AMIA.

Clinical concept extraction: A methodology review

Sunghwan Sohn, Liwei Wang, Feichen Shen, 2020, J. Biomed. Informatics.

The 2019 n2c2/OHNLP Track on Clinical Semantic Textual Similarity: Overview

Feichen Shen, Hongfang Liu, Yanshan Wang, 2020, JMIR medical informatics.

Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches

Cui Tao, Christopher G. Chute, Qian Zhu, 2013, Pacific Symposium on Biocomputing.

Leveraging a Joint of Phenotypic and Genetic Features on Cancer Patient Subgrouping pdf

Feichen Shen, Hongfang Liu, Chen Wang, 2021, ArXiv.

Corrigendum to: The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records

Feichen Shen, Özlem Uzuner, Sam Henry, 2021, J. Am. Medical Informatics Assoc..

PO2RDF: representation of real-world data for precision oncology using resource description framework

Nansu Zong, Feichen Shen, Hongfang Liu, 2021, BMC Medical Genomics.

Drug Screening to Treat Early-Onset Eye Diseases: Can Zebrafish Expedite the Discovery?

Feichen Shen, Yuk Fai Leung, Liyun Zhang, 2012, Asia-Pacific journal of ophthalmology.

Semantic Information Retrieval : Exploring Dependency and Word Embedding Features in Biomedical Information Retrieval

Feichen Shen, Yanshan Wang, Sijia Liu, 2017 .

Detecting Pharmacovigilance Signals Combining Electronic Medical Records With Spontaneous Reports: A Case Study of Conventional Disease-Modifying Antirheumatic Drugs for Rheumatoid Arthritis

Liwei Wang, Feichen Shen, Hongfang Liu, 2018, Front. Pharmacol..

Deep Phenotyping on Electronic Health Records Facilitates Genetic Diagnosis by Clinical Exomes.

George Hripcsak, Carol Friedman, Chunhua Weng, 2018, American journal of human genetics.