David S. Campo

发表

Efficient error correction for next-generation sequencing of viral amplicons

Pavel Skums, Zoya Dimitrova, David S. Campo, 2012, BMC Bioinformatics.

Automated quality control for a molecular surveillance system

David S. Campo, Alex Zelikovsky, Yuri Khudyakov, 2018, BMC Bioinformatics.

HCV Quasispecies Assembly Using Network Flows

Piotr Berman, David S. Campo, Alex Zelikovsky, 2008, ISBRA.

Differences in variability of hypervariable region 1 of hepatitis C virus (HCV) between acute and chronic stages of HCV infection

David S. Campo, Yuri Khudyakov, Irina V. Astrakhantseva, 2012, Silico Biol..

Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry

Pavel Skums, Zoya Dimitrova, David S. Campo, 2012, Silico Biol..

Variation in physicochemical properties of the hypervariable region 1 during acute and chronic stages of hepatitis C virus infection

David S. Campo, Yuri Khudyakov, Irina V. Astrakhantseva, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling

Ion I. Mandoiu, Pavel Skums, Zoya Dimitrova, 2015, Bioinform..

Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants

Pavel Skums, David S. Campo, Alex Zelikovsky, 2018, BMC Bioinformatics.

Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics.

David S. Campo, Yury Khudyakov, Y. Khudyakov, 2020, Journal of medical artificial intelligence.

Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response

Pavel Skums, Zoya Dimitrova, David S. Campo, 2012, Silico Biol..

Modelling differential interferon resistance of HCV quasispecies

Pavel Skums, Zoya Dimitrova, David S. Campo, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Alignment of DNA Mass-Spectral Profiles Using Network Flows

Pavel Skums, Zoya Dimitrova, David S. Campo, 2013, ISBRA.

Coordinated evolution of the Hepatitis B Virus Polymerase

Zoya Dimitrova, David S. Campo, Joseph C. Forbi, 2012, Silico Biol..

Mutational robustness of hepatitis C virus intra-host variants

Pavel Skums, Zoya Dimitrova, David S. Campo, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data

Pavel Skums, Zoya Dimitrova, David S. Campo, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Efficient detection of viral transmission with threshold-based methods

Chirag Jain, Srinivas Aluru, David S. Campo, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure

Zoya Dimitrova, David S. Campo, Yuri Khudyakov, 2008, ISBRA.

Efficient filtering algorithm for detection of genetic similarity between large genomic datasets

Pavel Skums, David S. Campo, Alex Zelikovsky, 2017, ICCABS.

Algorithms for prediction of viral transmission using analysis of intra-host viral populations

Nana Li, Pavel Skums, Zoya Dimitrova, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies

Pavel Skums, Zoya Dimitrova, David S. Campo, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences

David S. Campo, Yury Khudyakov, Y. Khudyakov, 2020, BMC Bioinformatics.

Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry

Pavel Skums, Zoya Dimitrova, David S. Campo, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Network of coordinated substitutions in the Hepatitis B virus polymerase

Zoya Dimitrova, David S. Campo, Joseph C. Forbi, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

New computational methods for assessing the genetic relatedness of close viral variants

Pavel Skums, Zoya Dimitrova, David S. Campo, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data

Igor Mandric, Pavel Skums, Zoya Dimitrova, 2018, Bioinform..

Predicting Opioid Epidemic by Using Twitter Data

Pavel Skums, David S. Campo, Alex Zelikovsky, 2018, ISBRA.

Error Correction of NGS Reads from Viral Populations

Pavel Skums, Zoya Dimitrova, David S. Campo, 2016 .

Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus

Pavel Skums, Zoya Dimitrova, David S. Campo, 2016, Cellular and molecular gastroenterology and hepatology.

Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma

David S. Campo, Ganesh Srinivasamoorthy, Vishal Nayak, 2019, BMC Medical Genomics.

Recent Population Expansions of Hepatitis B Virus in the United States

David S. Campo, Sumathi Ramachandran, M. Purdy, 2014, Journal of Virology.

Drug-resistance of a viral population and its individual intra-host variants during the first 48 hours of therapy

Pavel Skums, Zoya Dimitrova, David S. Campo, 2014, Clinical pharmacology and therapeutics.

Hepatitis C Virus Antigenic Convergence

Zoya Dimitrova, David S. Campo, Jonny Yokosawa, 2012, Scientific Reports.

Temporal Variations in the Hepatitis C Virus Intrahost Population during Chronic Infection

David S. Campo, Sumathi Ramachandran, M. Purdy, 2011, Journal of Virology.

Good laboratory practice for clinical next-generation sequencing informatics pipelines

Shashikant Kulkarni, Pavel Skums, David S. Campo, 2015, Nature Biotechnology.

Intelligent Network DisRuption Analysis (INDRA): A targeted strategy for efficient interruption of hepatitis C transmissions.

David S. Campo, Y. Khudyakov, D. Campo, 2018, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Molecular epidemiology of hepatitis B virus infection in Tanzania.

David S. Campo, M. Purdy, Y. Khudyakov, 2017, The Journal of general virology.

GHOST: global hepatitis outbreak and surveillance technology

David S. Campo, Y. Khudyakov, Hong Thai, 2017, BMC Genomics.

Detection of hepatitis C virus transmission by use of DNA mass spectrometry.

David S. Campo, Sumathi Ramachandran, Christiane Honisch, 2013, The Journal of infectious diseases.

A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences

David S. Campo, Y. Khudyakov, D. Campo, 2023, J. Comput. Biol..

Accurate Genetic Detection of Hepatitis C Virus Transmissions in Outbreak Settings.

David S. Campo, M. Purdy, Y. Khudyakov, 2016, The Journal of infectious diseases.

Intra‐host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire

David S. Campo, M. Purdy, Y. Khudyakov, 2014, Journal of medical virology.