Alex Zelikovsky

发表

Efficient error correction for next-generation sequencing of viral amplicons

Pavel Skums, Zoya Dimitrova, David S. Campo, 2012, BMC Bioinformatics.

Floorplan evaluation with timing-driven global wireplanning, pin assignment, and buffer/wire sizing

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2002, Proceedings of ASP-DAC/VLSI Design 2002. 7th Asia and South Pacific Design Automation Conference and 15h International Conference on VLSI Design.

12 Grand Challenges in Single-Cell Data Science

Fabian J. Theis, Marcel J. T. Reinders, Jan O. Korbel, 2019, PeerJ Prepr..

Genotype susceptibility and integrated risk factors for complex diseases

Alex Zelikovsky, Weidong Mao, Dumitru Brinza, 2006, 2006 IEEE International Conference on Granular Computing.

Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2016, bioRxiv.

An 11/6-approximation algorithm for the network steiner problem

Alex Zelikovsky, A. Zelikovsky, 1993, Algorithmica.

Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming

Ion I. Mandoiu, Alex Zelikovsky, James Lindsay, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

XML - Data를 이용한 웹 질의처리

Rajshekhar Sunderraman, Alex Zelikovsky, Sushil K. Prasad, 2000 .

Minimum-buffered routing of non-critical nets for slew rate and reliability control

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2001, IEEE/ACM International Conference on Computer Aided Design. ICCAD 2001. IEEE/ACM Digest of Technical Papers (Cat. No.01CH37281).

GKM over large MANET

Alex Zelikovsky, Nisar Hundewale, Sunsook Jung, 2005, SNPD.

Automated quality control for a molecular surveillance system

David S. Campo, Alex Zelikovsky, Yuri Khudyakov, 2018, BMC Bioinformatics.

Reference assisted nucleic acid sequence reconstruction from mass spectrometry data

Ion I. Mandoiu, Alex Zelikovsky, Gabriel Ilie, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Provably good global buffering by generalized multiterminalmulticommodity flow approximation

Andrew B. Kahng, Ion I. Mandoiu, Feodor F. Dragan, 2002, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

New graph bipartizations for double-exposure, bright field alternating phase-shift mask layout

Andrew B. Kahng, Alex Zelikovsky, Shailesh Vaya, 2001, ASP-DAC '01.

Fast bootstrapping‐based estimation of confidence intervals of expression levels and differential expression from RNA‐Seq data

Igor Mandric, Ion I. Mandoiu, Alex Zelikovsky, 2017, Bioinform..

WS-GraphMatching: a web service tool for graph matching

Qiong Cheng, Mitsunori Ogihara, Alex Zelikovsky, 2010, CIKM '10.

Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data

Rachel J. O'Neill, Craig Obergfell, Ion I. Mandoiu, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2018, BCB.

A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence

Riccardo Dondi, Eduardo D. Sontag, Alex Zelikovsky, 2007, WABI.

A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence

Riccardo Dondi, Eduardo D. Sontag, Alex Zelikovsky, 2007, WABI.

Optimal phase conflict removal for layout of dark field alternatingphase shifting masks

Andrew B. Kahng, Piotr Berman, Alex Zelikovsky, 2000, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Detecting Illicit Drug Ads in Google+ Using Machine Learning

Pavel Skums, Alex Zelikovsky, Yubao Wu, 2019, ISBRA.

Filling algorithms and analyses for layout density control

Andrew B. Kahng, Alex Zelikovsky, Gabriel Robins, 1999, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Fast Alignments of Metabolic Networks

Robert W. Harrison, Piotr Berman, Qiong Cheng, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Scalable genome scaffolding using integer linear programming

Ion I. Mandoiu, Alex Zelikovsky, James Lindsay, 2012, BCB.

Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem

Marek Karpinski, Ion I. Mandoiu, Alex Zelikovsky, 2005, Algorithmica.

HCV Quasispecies Assembly Using Network Flows

Piotr Berman, David S. Campo, Alex Zelikovsky, 2008, ISBRA.

The T-join Problem in Sparse Graphs: Applications to Phase Assignment Problem in VLSI Mask Layout

Andrew B. Kahng, Piotr Berman, Alex Zelikovsky, 1999, WADS.

Tighter Bounds for Graph Steiner Tree Approximation

Alex Zelikovsky, Gabriel Robins, A. Zelikovsky, 2005, SIAM J. Discret. Math..

Closing the smoothness and uniformity gap in area fill synthesis

Andrew B. Kahng, Yu Chen, Alex Zelikovsky, 2002, ISPD '02.

A Faster Approximation Algorithm for the Steiner Tree Problem in Graphs

Alex Zelikovsky, 1993, Inf. Process. Lett..

Evaluation of the new OASIS format for layout fill compression

Andrew B. Kahng, Yu Chen, Alex Zelikovsky, 2004, Proceedings of the 2004 11th IEEE International Conference on Electronics, Circuits and Systems, 2004. ICECS 2004..

An approximation algorithm for weighted itk-polymatroids and the Steiner tree problem in graphs

Alex Zelikovsky, 1993, IPCO.

kGEM: An EM-based algorithm for local reconstruction of viral quasispecies

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

The Polymatroid Steiner Problems

Gruia Calinescu, Alex Zelikovsky, 2005, J. Comb. Optim..

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications

Robert W. Harrison, Ion I. Mandoiu, Alex Zelikovsky, 2017, TCBB.

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire

Ion I. Mandoiu, Alex Zelikovsky, Ekaterina Nenastyeva, 2015, ICCABS.

Toward an easy programming environment for implementing mobile applications: a fleet application case study using SyD middleware

Yanqing Zhang, Saeid Belkasim, Rajshekhar Sunderraman, 2003, Proceedings 27th Annual International Computer Software and Applications Conference. COMPAC 2003.

Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations

Alex Zelikovsky, Serghei Mangul, Adrian Caciula, 2012, Silico Biol..

Hybrid SVM kernels for protein secondary structure prediction

Yi Pan, Robert W. Harrison, Alex Zelikovsky, 2006, 2006 IEEE International Conference on Granular Computing.

Poster: Haplotype discovery from high-throughput sequencing data

Alex Zelikovsky, Serghei Mangul, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Improved approximation bounds for the group Steiner problem

Alex Zelikovsky, Gabriel Robins, Christopher S. Helvig, 1998, Proceedings Design, Automation and Test in Europe.

2SNV: Quasispecies reconstruction from PacBio reads

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

MetNetAligner: a web service tool for metabolic network alignments

Robert W. Harrison, Qiong Cheng, Alex Zelikovsky, 2009, Bioinform..

Searching High-Order SNP Combinations for Complex Diseases Based on Energy Distribution Difference

Yi Pan, Jianxin Wang, Minzhu Xie, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Estimation of alternative splicing isoform frequencies from RNA-Seq data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2010, Algorithms for Molecular Biology.

Selected Papers from the 1st ACIS International Workshop on Self-Assembling Wireless Networks

Ion I. Mandoiu, Gruia Calinescu, Alex Zelikovsky, 2007, J. Univers. Comput. Sci..

Monte-Carlo algorithms for layout density control

Andrew B. Kahng, Yu Chen, Alex Zelikovsky, 2000, ASP-DAC '00.

Family trio phasing and missing data recovery

Alex Zelikovsky, Weidong Mao, Dumitru Brinza, 2005, Int. J. Bioinform. Res. Appl..

On the skew-bounded minimum-buffer routing tree problem

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Engineering a scalable placement heuristic for DNA probe arrays

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, RECOMB '03.

Approaching the 5/4-Approximation for Rectilinear Steiner Trees

Marek Karpinski, Michael Kaufmann, Piotr Berman, 1994, ESA.

Agent-Based in Silico Evolution of HCV Quasispecies

Pavel Skums, Alex Zelikovsky, Yuri Khudyakov, 2017, ISBRA.

Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways

Robert W. Harrison, Qiong Cheng, Alex Zelikovsky, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Discrete Methods for Association Search and Status Prediction in Genotype Case-Control Studies

Alex Zelikovsky, Dumitru Brinza, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Practical Approximations of Steiner Trees in Uniform Orientation Metrics

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2018, Handbook of Approximation Algorithms and Metaheuristics.

Multi-project reticle floorplanning and wafer dicing

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2004, ISPD '04.

Filling and slotting: analysis and algorithms

Andrew B. Kahng, Alex Zelikovsky, Gabriel Robins, 1997, ISPD '98.

DEEPS: Deterministic Energy-Efficient Protocol for Sensor networks

Alex Zelikovsky, Dumitru Brinza, 2006, Seventh ACIS International Conference on Software Engineering, Artificial Intelligence, Networking, and Parallel/Distributed Computing (SNPD'06).

Guest Editors’ Introduction to the Special Section on Bioinformatics Research and Applications

Yi Pan, Ion I. Mandoiu, Alex Zelikovsky, 2019, TCBB.

Applications of the Linear Matroid Parity Algorithm to Approximating Steiner Trees

Piotr Berman, Alex Zelikovsky, Martin Fürer, 2006, CSR.

Tag SNP Selection Based on Multivariate Linear Regression

Alex Zelikovsky, Jingwu He, 2006, International Conference on Computational Science.

Fast and Efficient Bright-Field AAPSM Conflict Detection and Correction

Andrew B. Kahng, Alex Zelikovsky, Subarna Sinha, 2007, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

2SNP: Scalable Phasing Method for Trios and Unrelated Individuals

Alex Zelikovsky, Dumitru Brinza, A. Zelikovsky, 2008, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Practical approximation algorithms for zero- and bounded-skew trees

Ion I. Mandoiu, Alex Zelikovsky, 2001, SODA '01.

Efficient Alignments of Metabolic Networks with Bounded Treewidth

Robert W. Harrison, Piotr Berman, Qiong Cheng, 2010, 2010 IEEE International Conference on Data Mining Workshops.

Scalable Heuristics for Design of DNA Probe Arrays

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2004, J. Comput. Biol..

A series of approximation algorithms for the acyclic directed steiner tree problem

Alex Zelikovsky, A. Zelikovsky, 1997, Algorithmica.

Risk Factor Searching Heuristics for SNP Case-Control Studies

Alex Zelikovsky, Dumitru Brinza, A. Zelikovsky, 2007, 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007).

Faster Approximation Algorithms for the Rectilinear Steiner Tree Problem

Michael Kaufmann, Alex Zelikovsky, Ulrich Fößmeier, 1993, ISAAC.

Multicommodity Flow Algorithms for Buffered Global Routing pdf

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2007, Handbook of Approximation Algorithms and Metaheuristics.

Bioinformatics Research and Applications

Xiang Wan, Pavel Skums, Alex Zelikovsky, 2016, Lecture Notes in Computer Science.

Bottleneck Steiner Tree Problems

Alex Zelikovsky, 2009, Encyclopedia of Optimization.

New approximation algorithms for routing with multiport terminals

Alex Zelikovsky, Gabriel Robins, Christopher S. Helvig, 2000, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Maximum Lifetime of Sensor Networks with Adjustable Sensing Range

Yingshu Li, Alex Zelikovsky, Sushil K. Prasad, 2006, Seventh ACIS International Conference on Software Engineering, Artificial Intelligence, Networking, and Parallel/Distributed Computing (SNPD'06).

A Study of Optimal Cost-Skew Tradeoff and Remaining Suboptimality in Interconnect Tree Constructions

Andrew B. Kahng, Alex Zelikovsky, Kwangsoo Han, 2018, 2018 ACM/IEEE International Workshop on System Level Interconnect Prediction (SLIP).

ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching

Igor Mandric, Alex Zelikovsky, 2015, RECOMB.

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling

Ion I. Mandoiu, Pavel Skums, Zoya Dimitrova, 2015, Bioinform..

Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants

Pavel Skums, David S. Campo, Alex Zelikovsky, 2018, BMC Bioinformatics.

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications

Yi Pan, Ion I. Mandoiu, Rajshekhar Sunderraman, 2009, IEEE ACM Trans. Comput. Biol. Bioinform..

Power efficient monitoring management in sensor networks

Piotr Berman, Gruia Calinescu, Alex Zelikovsky, 2004, 2004 IEEE Wireless Communications and Networking Conference (IEEE Cat. No.04TH8733).

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

Ion I. Mandoiu, Alex Zelikovsky, Dumitru Brinza, 2012, BMC Bioinformatics.

Moving-Target TSP and Related Problems

Alex Zelikovsky, Gabriel Robins, Christopher S. Helvig, 1998, ESA.

QoS Multimedia Multicast Routing

Ion I. Mandoiu, Alex Zelikovsky, Alexander Olshevsky, 2007, Handbook of Approximation Algorithms and Metaheuristics.

1.25 Approximation Algorithm for the Steiner Tree Problem with Distances One and Two

Marek Karpinski, Piotr Berman, Alex Zelikovsky, 2008, Electron. Colloquium Comput. Complex..

Modeling the Spread of HIV and HCV Infections Based on Identification and Characterization of High-Risk Communities Using Social Media

Rahul Singh, Pavel Skums, Alex Zelikovsky, 2017, ISBRA.

Highly scalable algorithms for rectilinear and octilinear Steiner trees

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, ASP-DAC '03.

Hierarchical dummy fill for process uniformity

Andrew B. Kahng, Yu Chen, Alex Zelikovsky, 2001, ASP-DAC '01.

Minimum buffered routing with bounded capacitive load for slew rate and reliability control

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Power efficient range assignment in ad-hoc wireless networks

Ernst Althaus, Ion I. Mandoiu, Gruia Calinescu, 2003, 2003 IEEE Wireless Communications and Networking, 2003. WCNC 2003..

Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities

Igor Mandric, Ion I. Mandoiu, Alex Zelikovsky, 2017, ISBRA.

Yield- and cost-driven fracturing for variable shaped-beam mask writing

Andrew B. Kahng, Alex Zelikovsky, Xu Xu, 2004, SPIE Photomask Technology.

Reconstruction of influenza a virus variants from PacBio reads

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

HapIso: An Accurate Method for the Haplotype- Specific Isoforms Reconstruction From Long Single-Molecule Reads

Eleazar Eskin, Alex Zelikovsky, Euan A. Ashley, 2017, IEEE Transactions on NanoBioscience.

Energy Efficient Node Caching and Load Balancing Enhancement of Reactive Ad Hoc Routing Protocols

Alex Zelikovsky, Nisar Hundewale, Sunsook Jung, 2007, J. Univers. Comput. Sci..

Special issue on Computing and Combinatorics Conference

Zhipeng Cai, Alex Zelikovsky, A. Zelikovsky, 2016, Theor. Comput. Sci..

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

Ion I. Mandoiu, Alex Zelikovsky, Dumitru Brinza, 2013, ICCABS.

Classification of HCV infections through sequence image normalization

Yi Pan, Pavel Skums, Alex Zelikovsky, 2017, ICCABS.

Optimizing pooling strategies for the massive next-generation sequencing of viral samples

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks

Ernst Althaus, Ion I. Mandoiu, Gruia Calinescu, 2006, Wirel. Networks.

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, BMC Bioinformatics.

Alignment of DNA Mass-Spectral Profiles Using Network Flows

Pavel Skums, Zoya Dimitrova, David S. Campo, 2013, ISBRA.

New Approximation Algorithms for the Steiner Tree Problems

Marek Karpinski, Alex Zelikovsky, M. Karpinski, 1997, J. Comb. Optim..

Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, WABI.

Benchmarking of computational error-correction methods for next-generation sequencing data

Igor Mandric, Mihai Pop, Eleazar Eskin, 2020, BCB.

An Approximation Algorithm for the Bandwidth Problem on Dense Graphs

Marek Karpinski, Alex Zelikovsky, Juergen Wirtgen, 1997, Electron. Colloquium Comput. Complex..

Practical Approximation Algorithms for Separable Packing Linear Programs

Andrew B. Kahng, Ion I. Mandoiu, Feodor F. Dragan, 2001, WADS.

Primal-dual algorithms for QoS multimedia multicast

Cristina G. Fernandes, Ion I. Mandoiu, Gruia Calinescu, 2003, GLOBECOM '03. IEEE Global Telecommunications Conference (IEEE Cat. No.03CH37489).

Selecting Forwarding Neighbors in Wireless Ad Hoc Networks

Ion I. Mandoiu, Peng-Jun Wan, Gruia Calinescu, 2004, Mob. Networks Appl..

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications

Yi Pan, Ion I. Mandoiu, Alex Zelikovsky, 2008, TCBB.

Deterministic regression algorithm for transcriptome frequency estimation

Ion I. Mandoiu, Alex Zelikovsky, Alexander Artyomenko, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Combinatorial Optimization Algorithms for Metabolic Networks Alignments and Their Applications

Qiong Cheng, Alex Zelikovsky, 2011, Int. J. Knowl. Discov. Bioinform..

Fixed-Parameter Tractable Combinatorial Algorithms for Metabolic Networks Alignments

Qiong Cheng, Mitsunori Ogihara, Alex Zelikovsky, 2010, 2010 IEEE International Conference on Data Mining Workshops.

Area fill synthesis for uniform layout density

Andrew B. Kahng, Yu Chen, Alex Zelikovsky, 2002, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data

Pavel Skums, Zoya Dimitrova, David S. Campo, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire

Ion I. Mandoiu, Alex Zelikovsky, Yurij Ionov, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Symmetric Connectivity with Minimum Power Consumption in Radio Networks

Ion I. Mandoiu, Gruia Calinescu, Alex Zelikovsky, 2002, IFIP TCS.

Workshop: A maximum likelihood method for quasispecies spectrum assembly

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Optimal phase conflict removal for layout of dark field alternating phase shifting masks

Andrew B. Kahng, Piotr Berman, Alex Zelikovsky, 1999, ISPD '99.

Area fill generation with inherent data volume reduction

Andrew B. Kahng, Yu Chen, Alex Zelikovsky, 2003, 2003 Design, Automation and Test in Europe Conference and Exhibition.

Routing Using Messengers in Sparse and Disconnected Mobile Sensor Networks

Yanqing Zhang, Xiaolin Hu, Qiong Cheng, 2006, Advances in Web Intelligence and Data Mining.

A note on the colorability of mixed hypergraph using k colors

Dmitrii Lozovanu, Vitaly I. Voloshin, Alex Zelikovsky, 2002, Comput. Sci. J. Moldova.

Energy-efficient continuous and event-driven monitoring

Gruia Calinescu, Alex Zelikovsky, Dumitru Brinza, 2005, IEEE International Conference on Mobile Adhoc and Sensor Systems Conference, 2005..

Practical iterated fill synthesis for CMP uniformity

Andrew B. Kahng, Yu Chen, Alex Zelikovsky, 2000, DAC.

On wirelength estimations for row-based placement

Andrew B. Kahng, Igor L. Markov, Alex Zelikovsky, 1998, ISPD '98.

Evaluation of placement techniques for DNA probe array layout

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, ICCAD-2003. International Conference on Computer Aided Design (IEEE Cat. No.03CH37486).

On wirelength estimations for row-based placement

Andrew B. Kahng, Igor L. Markov, Alex Zelikovsky, 1998, ISPD '98.

Combinatorial Methods for Disease Association Search and Susceptibility Prediction

Alex Zelikovsky, Dumitru Brinza, 2006, WABI.

Poster: Scaffolding draft genomes using paired sequencing data

J. Zhang, Rachel J. O'Neill, Y. Wu, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

New and exact filling algorithms for layout density control

Andrew B. Kahng, Alex Zelikovsky, Gabriel Robins, 1999, Proceedings Twelfth International Conference on VLSI Design. (Cat. No.PR00013).

Repeat‐aware evaluation of scaffolding tools

Igor Mandric, Alex Zelikovsky, Sergey Knyazev, 2018, Bioinform..

Border Length Minimization in DNA Array Design

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2002, WABI.

Mobile Fleet Application using Soap and System on Devices (SYD) Middleware Technologies

Yanqing Zhang, Saeid Belkasim, Rajshekhar Sunderraman, 2002, Communications, Internet, and Information Technology.

A note on the MST heuristic for bounded edge-length Steiner trees with minimum number of Steiner points

Ion I. Mandoiu, Alex Zelikovsky, 2000, Inf. Process. Lett..

Selecting Forwarding Neighbors in Wireless Ad Hoc Networks

Ion I. Mandoiu, Peng-Jun Wan, Gruia Calinescu, 2001, DIALM '01.

Phasing and Missing Data Recovery in Family Trios

Alex Zelikovsky, Weidong Mao, Dumitru Brinza, 2005, International Conference on Computational Science.

Computer-Aided Optimization of DNA Array Design and Manufacturing

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2006, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

2SNP: scalable phasing based on 2-SNP haplotypes

Alex Zelikovsky, Dumitru Brinza, A. Zelikovsky, 2006, Bioinform..

Network Lifetime and Power Assignment in ad hoc Wireless Networks

Gruia Calinescu, Alex Zelikovsky, Alexander Olshevsky, 2003, ESA.

MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression

Alex Zelikovsky, Jingwu He, A. Zelikovsky, 2006, Bioinform..

The last achievements in Steiner tree approximations

Alex Zelikovsky, A. Zelikovsky, 1993, Comput. Sci. J. Moldova.

Inference of clonal selection in cancer populations using single-cell sequencing data

Pavel Skums, Alex Zelikovsky, Viachaslau Tsyvina, 2019, Bioinform..

Enhanced Design Flow and Optimizations for Multiproject Wafers

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2007, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

Estimation of viral population structure from amplicon-based reads

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

A New Approximation Algorithm for Finding Heavy Planar Subgraphs

Cristina G. Fernandes, Gruia Calinescu, Alex Zelikovsky, 2003, Algorithmica.

Collaborative Topology Control for Lifetime Maximization

Lei Shi, Wen-Zhan Song, Alex Zelikovsky, 2011, 2011 Seventh International Conference on Mobile Ad-hoc and Sensor Networks.

An improved approximation scheme for the Group Steiner Problem

Alex Zelikovsky, Gabriel Robins, Christopher S. Helvig, 2001, Networks.

Fast yield-driven fracture for variable shaped beam mask writing

Andrew B. Kahng, Alex Zelikovsky, Xu Xu, 2006, Photomask Japan.

Optimal Testing of Digital Microfluidic Biochips

Ion I. Mandoiu, Alex Zelikovsky, Bogdan Pasaniuc, 2011, INFORMS J. Comput..

Invited: Metabolic network alignments

Alex Zelikovsky, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Accurate viral population assembly from ultra-deep sequencing data

Eleazar Eskin, Alex Zelikovsky, Nicholas C. Wu, 2014, Bioinform..

Efficient filtering algorithm for detection of genetic similarity between large genomic datasets

Pavel Skums, David S. Campo, Alex Zelikovsky, 2017, ICCABS.

Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

A Factor 3/2 Approximation for Generalized Steiner Tree Problem with Distances One and Two pdf

Marek Karpinski, Piotr Berman, Alex Zelikovsky, 2008, ArXiv.

Linear reduction method for predictive and informative tag SNP selection

Alex Zelikovsky, Jingwu He, Kelly Westbrooks, 2005, Int. J. Bioinform. Res. Appl..

1.25-Approximation Algorithm for Steiner Tree Problem with Distances 1 and 2

Marek Karpinski, Piotr Berman, Alex Zelikovsky, 2009, WADS.

Algorithms for prediction of viral transmission using analysis of intra-host viral populations

Nana Li, Pavel Skums, Zoya Dimitrova, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

The moving-target traveling salesman problem

Alex Zelikovsky, Gabriel Robins, Christopher S. Helvig, 2003, J. Algorithms.

Spanning Closed Trail and Hamiltonian Cycle in Grid Graphs

Alex Zelikovsky, Cho Hwan-Gue, 1995, ISAAC.

The associative-skew clock routing problem

Gang Qu, Andrew B. Kahng, Yu Chen, 1999, 1999 IEEE/ACM International Conference on Computer-Aided Design. Digest of Technical Papers (Cat. No.99CH37051).

Auctions with Buyer Preferences

Andrew B. Kahng, Ion I. Mandoiu, Yu Chen, 2002, Information Systems: The e-Business Challenge.

Improved Approximation Algorithms for the Quality of Service Steiner Tree Problem

Marek Karpinski, Ion I. Mandoiu, Alex Zelikovsky, 2003, WADS.

Node caching enhancement of reactive ad hoc routing protocols [MANET]

Alex Zelikovsky, Nisar Hundewale, Sunsook Jung, 2005, IEEE Wireless Communications and Networking Conference, 2005.

Design flow enhancements for DNA arrays

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, Proceedings 21st International Conference on Computer Design.

GaussianCpG: A Gaussian model for detection of human CpG island

Yi Pan, Alex Zelikovsky, Xuan Guo, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Reconstructing viral quasispecies from NGS amplicon reads

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2012, Silico Biol..

Distributed Algorithms for TDMA Link Scheduling in Sensor Networks

Thamer Alsulaiman, Alex Zelikovsky, Sushil K. Prasad, 2012, 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum.

Phasing of 2-SNP Genotypes Based on Non-random Mating Model

Alex Zelikovsky, Dumitru Brinza, 2006, International Conference on Computational Science.

ILP-based maximum likelihood genome scaffolding

Ion I. Mandoiu, Alex Zelikovsky, James Lindsay, 2014, BMC Bioinformatics.

Scheduling Bursts Using Interval Graphs in Optical Burst Switching Networks

Yichuan Wang, Xiaojun Cao, Alex Zelikovsky, 2009, GLOBECOM 2009 - 2009 IEEE Global Telecommunications Conference.

Poster: ViSpA: Viral spectrum assembling method

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Haplotype tagging using support vector machines

Jun Zhang, Yanqing Zhang, Alex Zelikovsky, 2006, 2006 IEEE International Conference on Granular Computing.

Linear Reduction for Haplotype Inference

Alex Zelikovsky, Jingwu He, 2004, WABI.

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2016, RECOMB.

The Polymatroid Steiner Problems

Gruia Calinescu, Alex Zelikovsky, 2004, ISAAC.

Improved Steiner tree approximation in graphs

Alex Zelikovsky, Gabriel Robins, A. Zelikovsky, 2000, SODA '00.

Provably good routing tree construction with multi-port terminals

Alex Zelikovsky, Gabriel Robins, Christopher S. Helvig, 1997, ISPD '97.

Compressible area fill synthesis

Andrew B. Kahng, Yu Chen, Alex Zelikovsky, 2005, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

Optimization of linear placements for wirelength minimization with free sites

Andrew B. Kahng, Alex Zelikovsky, Paul Tucker, 1999, Proceedings of the ASP-DAC '99 Asia and South Pacific Design Automation Conference 1999 (Cat. No.99EX198).

Minimum Steiner Tree Construction

Alex Zelikovsky, Gabriel Robins, A. Zelikovsky, 2008, Handbook of Algorithms for Physical Design Automation.

A 3/2-Approximation Algorithm for Generalized Steiner Trees in Complete Graphs with Edge Lengths 1 and 2

Marek Karpinski, Piotr Berman, Alex Zelikovsky, 2010, ISAAC.

VGA: A method for viral quasispecies assembly from ultra-deep sequencing data

Eleazar Eskin, Alex Zelikovsky, Nicholas C. Wu, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Faster Approximation Algorithms for the Rectilinear Steiner Tree Problem

Michael Kaufmann, Alex Zelikovsky, Ulrich Fößmeier, 1993, ISAAC.

Fill for Shallow Trench Isolation CMP

Andrew B. Kahng, Puneet Sharma, Alex Zelikovsky, 2006, 2006 IEEE/ACM International Conference on Computer Aided Design.

Maximum Series-Parallel Subgraph

Cristina G. Fernandes, Gruia Calinescu, Alex Zelikovsky, 2011, Algorithmica.

Inferring viral quasispecies spectra from 454 pyrosequencing reads

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, BMC Bioinformatics.

Genotype Tagging with Limited Overfitting

Alex Zelikovsky, Irina Astrovskaya, A. Zelikovsky, 2009, BSB.

Provably good global buffering using an available buffer block plan

Andrew B. Kahng, Ion I. Mandoiu, Feodor F. Dragan, 2000, IEEE/ACM International Conference on Computer Aided Design. ICCAD - 2000. IEEE/ACM Digest of Technical Papers (Cat. No.00CH37140).

Provably good global buffering by multi-terminal multicommodity flow approximation

Andrew B. Kahng, Ion I. Mandoiu, Feodor F. Dragan, 2001, ASP-DAC '01.

ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching

Igor Mandric, Alex Zelikovsky, A. Zelikovsky, 2015, RECOMB.

1.757 and 1.267 - Approximation Algorithms for the Network and Rectilinear Steiner Tree Problems

Marek Karpinski, Alex Zelikovsky, A. Zelikovsky, 1994, Electron. Colloquium Comput. Complex..

Mean Square Residue Biclustering with Missing Data and Row Inversions

Alex Zelikovsky, Stefan Gremalschi, Irina Astrovskaya, 2009, ISBRA.

Bright-field AAPSM conflict detection and correction

Andrew B. Kahng, Alex Zelikovsky, Subarna Sinha, 2005, Design, Automation and Test in Europe.

Computing and Combinatorics

Zhipeng Cai, Alex Zelikovsky, 2016, Algorithmica.

CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2017, BCB.

SyD: A Middleware Testbed for Collaborative Applications over Small Heterogeneous Devices and Data Stores

Yi Pan, Yanqing Zhang, Saeid Belkasim, 2004, Middleware.

SILP3: Maximum likelihood approach to scaffolding

Igor Mandric, Ion I. Mandoiu, Alex Zelikovsky, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Practical Approximations of Steiner Trees in Uniform Orientation Metrics

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2007, Handbook of Approximation Algorithms and Metaheuristics.

Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2010, WABI.

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data

Igor Mandric, Pavel Skums, Zoya Dimitrova, 2018, Bioinform..

Predicting Opioid Epidemic by Using Twitter Data

Pavel Skums, David S. Campo, Alex Zelikovsky, 2018, ISBRA.

New multilevel and hierarchical algorithms for layout density control

Andrew B. Kahng, Alex Zelikovsky, Gabriel Robins, 1999, Proceedings of the ASP-DAC '99 Asia and South Pacific Design Automation Conference 1999 (Cat. No.99EX198).

Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning

Pavel Skums, Alex Zelikovsky, Yuri Khudyakov, 2017, ICCABS.

Design and Validation of Methods Searching for Risk Factors in Genotype Case-Control Studies

Alex Zelikovsky, Dumitru Brinza, 2008, J. Comput. Biol..

A Novel Network Representation of SARS-CoV-2 Sequencing Data

Pavel Skums, Alex Zelikovsky, Serghei Mangul, 2021, ISBRA.

Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020)

Zhipeng Cai, Pavel Skums, Alex Zelikovsky, 2021, J. Comput. Biol..

Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020)

Sanguthevar Rajasekaran, Ion I. Mandoiu, Pavel Skums, 2021, J. Comput. Biol..

Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019)

Giri Narasimhan, T. M. Murali, Sanguthevar Rajasekaran, 2021, J. Comput. Biol..