Yuri Khudyakov

David S. Campo, Yuri Khudyakov, Irina V. Astrakhantseva, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling

Zoya Dimitrova, Yuri Khudyakov, James Lara, 2008, ISBRA.

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling

Ion I. Mandoiu, Pavel Skums, Zoya Dimitrova, 2015, Bioinform..

Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants

Pavel Skums, David S. Campo, Alex Zelikovsky, 2018, BMC Bioinformatics.

Modeling the Spread of HIV and HCV Infections Based on Identification and Characterization of High-Risk Communities Using Social Media

Rahul Singh, Pavel Skums, Alex Zelikovsky, 2017, ISBRA.

Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response

Pavel Skums, Zoya Dimitrova, David S. Campo, 2012, Silico Biol..

Classification of HCV infections through sequence image normalization

Yi Pan, Pavel Skums, Alex Zelikovsky, 2017, ICCABS.

Host-specific HCV evolution and response to the combined interferon and ribavirin therapy

Gilberto Vaughan, Joseph C. Forbi, Yuri Khudyakov, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Optimizing pooling strategies for the massive next-generation sequencing of viral samples

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Modelling differential interferon resistance of HCV quasispecies

Pavel Skums, Zoya Dimitrova, David S. Campo, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Artificial neural network for prediction of antigenic activity for a major conformational epitope in the hepatitis C virus NS3 protein

Zoya Dimitrova, Yuri Khudyakov, James Lara, 2008, Bioinform..

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, BMC Bioinformatics.

Alignment of DNA Mass-Spectral Profiles Using Network Flows

Pavel Skums, Zoya Dimitrova, David S. Campo, 2013, ISBRA.

Highlights: Predicting the cross-immunoreactivity of hepatitis C virus hyper-variable region 1 peptides using polynomial neural networks

Gilberto Vaughan, Livia Rossi, Yuri Khudyakov, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Coordinated evolution of the Hepatitis B Virus Polymerase

Zoya Dimitrova, David S. Campo, Joseph C. Forbi, 2012, Silico Biol..

Mutational robustness of hepatitis C virus intra-host variants

Pavel Skums, Zoya Dimitrova, David S. Campo, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data

Pavel Skums, Zoya Dimitrova, David S. Campo, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction

Yuri Khudyakov, Xiaojun Xu, Lilia Ganova-Raeva, 2016, BMC Bioinformatics.

Coordinated evolution among hepatitis C virus genomic sites is coupled to host factors and resistance to interferon

Gilberto Vaughan, Joseph C. Forbi, Yuri Khudyakov, 2012, Silico Biol..

Hepatitis C virus genetic association to rate of liver fibrosis progression

Yuri Khudyakov, Fernando González-Candelas, James Lara, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Efficient detection of viral transmission with threshold-based methods

Chirag Jain, Srinivas Aluru, David S. Campo, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure

Zoya Dimitrova, David S. Campo, Yuri Khudyakov, 2008, ISBRA.

Studying the error for HCV amplicon sequencing with the Illumina MiSeq platform

Pavel Skums, Zoya Dimitrova, Yuri Khudyakov, 2016 .

Efficient filtering algorithm for detection of genetic similarity between large genomic datasets

Pavel Skums, David S. Campo, Alex Zelikovsky, 2017, ICCABS.

Algorithms for prediction of viral transmission using analysis of intra-host viral populations

Nana Li, Pavel Skums, Zoya Dimitrova, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies

Pavel Skums, Zoya Dimitrova, David S. Campo, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry

Pavel Skums, Zoya Dimitrova, David S. Campo, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Network of coordinated substitutions in the Hepatitis B virus polymerase

Zoya Dimitrova, David S. Campo, Joseph C. Forbi, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Modeling antigenic property of the hepatitis C virus NS3 protein

Yuri Khudyakov, James Lara, J. Lara, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

New computational methods for assessing the genetic relatedness of close viral variants

Pavel Skums, Zoya Dimitrova, David S. Campo, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2017, BCB.

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data

Igor Mandric, Pavel Skums, Zoya Dimitrova, 2018, Bioinform..

Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning

Pavel Skums, Alex Zelikovsky, Yuri Khudyakov, 2017, ICCABS.