Xuegong Zhang

发表

A case study on the detailed reproducibility of a human cell atlas project

Kui Hua, Xuegong Zhang, 2018 .

Proceedings of the 17th international conference on Research in Computational Molecular Biology

Rui Jiang, Minghua Deng, Fengzhu Sun, 2013 .

QB: Embracing the future of quantitative understanding and engineering of life

Xuegong Zhang, 2019, Quant. Biol..

Discrimination and feature selection of geographic origins of traditional Chinese medicine herbs with NIR spectroscopy

Shuhua Liu, Xuegong Zhang, Suqin Sun, 2005 .

SOMDE: a scalable method for identifying spatially variable genes with self-organizing map

Kui Hua, Xuegong Zhang, Minsheng Hao, 2021, Bioinform..

HGC: fast hierarchical clustering for large-scale single-cell data

Kui Hua, Xuegong Zhang, Ziheng Zou, 2021, Bioinform..

CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images

Xiaowo Wang, Xuegong Zhang, Tao Hu, 2021, Bioinform..

Toward a unified information framework for cell atlas assembly

Sijie Chen, Kui Hua, Xuegong Zhang, 2021, National Science Review.

Erratum to: A survey of best practices for RNA-seq data analysis

David Gomez-Cabrero, Laura L. Elo, Ana Conesa, 2016, Genome Biology.

A Method to Compensate Earth Filtering based on Wavelet Packet

Xuegong Zhang, KunPeng Li, YanDa Li, 2000 .

Karyotyping of comparative genomic hybridization human metaphases by using support vector machines.

Liang Ji, Zhenzhen Kou, Xuegong Zhang, 2002, Cytometry.

The effect of haplotype-block definitions on inference of haplotype-block structure and htSNPs selection.

Jing Zhang, Xuegong Zhang, Kaixin Zhou, 2005, Molecular biology and evolution.

Array comparative genome hybridization for tumor classification and gene discovery in mouse models of malignant melanoma.

Wing Hung Wong, Lynda Chin, Xuegong Zhang, 2003, Cancer research.

Symptom combinations associated with outcome and therapeutic effects in a cohort of cases with SARS.

A Joseph Layon, Yanda Li, Shao Li, 2006, The American journal of Chinese medicine.

Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians

Tien Yin Wong, Wei Huang, Takao Sugiyama, 2011, Nature Genetics.

Predicting the fate of microRNA target genes based on sequence features.

Xuegong Zhang, Xuegong Zhang, Xi Wang, 2009, Journal of theoretical biology.

Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data

Xuegong Zhang, Tingting Li, Xuegong Zhang, 2016, BMC Genomics.

Evidence and characteristics of putative human alpha recombination hotspots.

Michael Q. Zhang, Jun Li, Jing Zhang, 2004, Human molecular genetics.

Analysis and prediction of super-enhancers using sequence and chromatin signatures

Xuegong Zhang, Aziz Khan, Xuegong Zhang, 2017, bioRxiv.

CpG island methylation pattern in different human tissues and its correlation with gene expression.

Shicai Fan, Xuegong Zhang, Xuegong Zhang, 2009, Biochemical and biophysical research communications.

Basics for Bioinformatics

Xiaowo Wang, Xueya Zhou, Xuegong Zhang, 2013 .

Identifying differentially spliced genes from two groups of RNA-seq samples.

Xuegong Zhang, Zhixing Feng, Xuegong Zhang, 2013, Gene.

Multi-Locus Penetrance Variance Analysis Method for Association Study in Complex Diseases

Yanda Li, Zhongqi Zhang, Xuegong Zhang, 2006, Human Heredity.

The impact of very short alternative splicing on protein structures and functions in the human genome.

Yanda Li, Huiyu Xia, Xuegong Zhang, 2004, Trends in genetics : TIG.

Improvement of Dscam homophilic binding affinity throughout Drosophilaevolution

Qiang Yang, Xinyun Ma, Xuegong Zhang, 2014, BMC Evolutionary Biology.

Functional importance of different patterns of correlation between adjacent cassette exons in human and mouse

Yanda Li, Xiaowo Wang, Jianning Bi, 2008, BMC Genomics.

Estimating reservoir`s lithological parameters from seismic data using neural network

Xuegong Zhang, Yanda Li, Fugui Liu, 1995 .

The effect of GeneChip gene definitions on the microarray study of cancers.

Xuesong Lu, Xuegong Zhang, Xuegong Zhang, 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.

Network embedding-based representation learning for single cell RNA-seq data

Michael Q. Zhang, Jin Gu, Weizheng Chen, 2017, Nucleic acids research.

Multi-stage analysis of gene expression and transcription regulation in C57/B6 mouse liver development.

Michael Q. Zhang, Fuchu He, Ying Jiang, 2009, Genomics.

Predicted methylation landscape of all CpG islands on the human genome

Jianxiao Zou, Hongbing Xu, Shicai Fan, 2010 .

Evidence and characteristics of putative human α recombination hotspots

Michael Q. Zhang, Xuegong Zhang, Jun Li, 2004 .

Tongue coating microbiome as a potential biomarker for gastritis including precancerous cascade

Hongfei Cui, Shao Li, Xuegong Zhang, 2018, Protein & Cell.

Characterization and Prediction of Lysine (K)-Acetyl-Transferase Specific Acetylation Sites*

Wei-Guo Zhu, Yipeng Du, Xuegong Zhang, 2011, Molecular & Cellular Proteomics.

Observations on potential novel transcripts from RNA-Seq data

Xuegong Zhang, Xuegong Zhang, Xi Wang, 2011 .

A new method for detecting human recombination hotspots and its applications to the HapMap ENCODE data.

Michael Q. Zhang, Jun Li, Xuegong Zhang, 2006, American journal of human genetics.

Early-stage Reservoir Analysis With SOMA: A Neural Network Approach

Xuegong Zhang, Yanda Li, Qiang Hu, 1995 .

Alignment-free supervised classification of metagenomes by recursive SVM

Hongfei Cui, Xuegong Zhang, Xuegong Zhang, 2013, BMC Genomics.

Molecular classification of liver cirrhosis in a rat model by proteomics and bioinformatics

Xin Lu, Arndt Asperger, Xuegong Zhang, 2004, Proteomics.

gMap : extracting and interactively visualizing nonlinear relationships of genes from expression data

Yanda Li, Chaolin Zhang, Xuegong Zhang, 2004 .

Prediction of kinase‐specific phosphorylation sites with sequence features by a log‐odds ratio approach

Xuegong Zhang, Tingting Li, Xuegong Zhang, 2007, Proteins.

Histone methylation marks play important roles in predicting the methylation status of CpG islands.

Michael Q. Zhang, Shicai Fan, Xuegong Zhang, 2008, Biochemical and biophysical research communications.

mRIN for direct assessment of genome-wide and gene-specific mRNA integrity from large-scale RNA-sequencing data

Xuegong Zhang, Chaolin Zhang, Xuegong Zhang, 2015, Nature Communications.

Putative Zinc Finger Protein Binding Sites Are Over-Represented in the Boundaries of Methylation-Resistant CpG Islands in the Human Genome

Michael Q. Zhang, Shicai Fan, Xuegong Zhang, 2007, PloS one.

Isoform reconstruction using short RNA-Seq reads by maximum likelihood is NP-hard

Xuegong Zhang, Rui Jiang, Xuegong Zhang, 2013, 1305.0916.

Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome

Shao Li, Xuegong Zhang, Rui Jiang, 2012, Scientific Reports.

Annual periodicity in planktonic bacterial and archaeal community composition of eutrophic Lake Taihu

Yunfeng Yang, Lianshuo Li, Xuegong Zhang, 2015, Scientific Reports.

Computational operon prediction in whole-genomes and metagenomes.

Xuegong Zhang, Xuegong Zhang, Syed Shujaat Ali Zaidi, 2016, Briefings in functional genomics.

Comparison of metagenomic samples using sequence signatures

Minghua Deng, Fengzhu Sun, Xuegong Zhang, 2012, BMC Genomics.

The Application of Wavelet Transform in Automatic Segmentation

Xuegong Zhang, Hui Yan, KunPeng Li, 2000 .

Primary transcripts and expressions of mammal intergenic microRNAs detected by mapping ESTs to their flanking sequences

Fei Li, Yanda Li, Jing Zhang, 2006, Mammalian Genome.

Predicting features of breast cancer with gene expression patterns

Xuesong Lu, Xuegong Zhang, Andrea L. Richardson, 2008, Breast Cancer Research and Treatment.

Kernels based on weighted Levenshtein distance

Jianhua Xu, Xuegong Zhang, Xuegong Zhang, 2004, 2004 IEEE International Joint Conference on Neural Networks (IEEE Cat. No.04CH37541).