Ruifeng Liu

发表

Enabling data-limited chemical bioactivity predictions through deep neural network transfer learning

J. Reifman, A. Wallqvist, S. Laxminarayan, 2022, Journal of Computer-Aided Molecular Design.

Rapid Classification of CYP3A4 Inhibition Potential Using Support Vector Machine Approach

R. Zauhar, I. Zamora, Diansong Zhou, 2007 .

Deep Neural Network Models for Predicting Chemically Induced Liver Toxicity Endpoints From Transcriptomic Responses

Ruifeng Liu, Anders Wallqvist, Hao Wang, 2019, Front. Pharmacol..

Data-driven identification of structural alerts for mitigating the risk of drug-induced human liver injuries

Ruifeng Liu, Anders Wallqvist, Xueping Yu, 2015, Journal of Cheminformatics.

Technology Review Special FocuS: compuTaTional chemiSTRy

Megan L. Peach, A. Zakharov, A. Wallqvist, 2012 .

Assessing Deep and Shallow Learning Methods for Quantitative Prediction of Acute Chemical Toxicity

Ruifeng Liu, Anders Wallqvist, Kyle P Glover, 2018, Toxicological sciences : an official journal of the Society of Toxicology.

Genome-wide gene expression changes associated with exposure of rat liver, heart, and kidney cells to endosulfan.

A. Wallqvist, R. Printz, M. Shiota, 2018, Toxicology in vitro : an international journal published in association with BIBRA.

Using Chemical-Induced Gene Expression in Cultured Human Cells to Predict Chemical Toxicity.

Ruifeng Liu, Anders Wallqvist, Xueping Yu, 2016, Chemical research in toxicology.

QSAR Classification Model for Antibacterial Compounds and Its Use in Virtual Screening

Ruifeng Liu, Anders Wallqvist, Narender Singh, 2012, J. Chem. Inf. Model..

vNN Web Server for ADMET Predictions

Ruifeng Liu, Valmik Desai, Anders Wallqvist, 2017, Front. Pharmacol..

2D SMARTCyp Reactivity-Based Site of Metabolism Prediction for Major Drug-Metabolizing Cytochrome P450 Enzymes

Jin Liu, Ruifeng Liu, Anders Wallqvist, 2012, J. Chem. Inf. Model..

Discovery and Pharmacological Characterization of a Small-Molecule Antagonist at Neuromedin U Receptor NMUR2

S. Trivedi, Jian Huang, Jay Liu, 2009, Journal of Pharmacology and Experimental Therapeutics.

Merging Applicability Domains for in Silico Assessment of Chemical Mutagenicity

Ruifeng Liu, Anders Wallqvist, A. Wallqvist, 2014, J. Chem. Inf. Model..

Using the Variable-Nearest Neighbor Method To Identify P-Glycoprotein Substrates and Inhibitors

A. Wallqvist, Patric Schyman, Ruifeng Liu, 2016, ACS omega.

General Purpose 2D and 3D Similarity Approach to Identify hERG Blockers

Ruifeng Liu, Anders Wallqvist, Patric Schyman, 2016, J. Chem. Inf. Model..

Critically Assessing the Predictive Power of QSAR Models for Human Liver Microsomal Stability

Ruifeng Liu, Anders Wallqvist, Patric Schyman, 2015, J. Chem. Inf. Model..

Locally weighted learning methods for predicting dose-dependent toxicity with application to the human maximum recommended daily dose.

Ruifeng Liu, Anders Wallqvist, Gregory Tawa, 2012, Chemical research in toxicology.

Using Molecular Fingerprint as Descriptors in the QSPR Study of Lipophilicity

Ruifeng Liu, Diansong Zhou, Diansong Zhou, 2008, J. Chem. Inf. Model..

Baculovirus Infected Insect Cells

Diansong Zhou, S. Grimm, A. Linnenbach, 2010 .

Expression and Characterization of Dog Cytochrome P450 2A13 and 2A25 in Baculovirus-Infected Insect Cells

Diansong Zhou, S. Grimm, A. Linnenbach, 2010, Drug Metabolism and Disposition.

Expression and Characterization of Dog Cytochrome P450 2A13 and 2A25 in Baculovirus-Infected Insect Cells

Diansong Zhou, S. Grimm, A. Linnenbach, 2010, Drug Metabolism and Disposition.

Development of Quantitative Structure-Property Relationship Models for Early ADME Evaluation in Drug Discovery. 1. Aqueous Solubility

Ruifeng Liu, Sung-Sau So, S. So, 2001, J. Chem. Inf. Comput. Sci..

Computational tools and resources for metabolism-related property predictions. 1. Overview of publicly available (free and commercial) databases and software.

Alexey V Zakharov, Ruifeng Liu, Anders Wallqvist, 2012, Future medicinal chemistry.

Exploiting large-scale drug-protein interaction information for computational drug repurposing

Jaques Reifman, Ruifeng Liu, Anders Wallqvist, 2014, BMC Bioinformatics.

Development of Quantitative Structure-Property Relationship Models for Early ADME Evaluation in Drug Discovery. 2. Blood-Brain Barrier Penetration

Ruifeng Liu, Hongmao Sun, Sung-Sau So, 2001, J. Chem. Inf. Comput. Sci..

Data-driven prediction of adverse drug reactions induced by drug-drug interactions

Jaques Reifman, Ruifeng Liu, Anders Wallqvist, 2017, BMC Pharmacology and Toxicology.

Application of a Dried-DMSO rapid throughput 24-h equilibrium solubility in advancing discovery candidates.

Yun Alelyunas, Luciana Pelosi-Kilby, Ruifeng Liu, 2009, European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences.

Molecular Similarity-Based Domain Applicability Metric Efficiently Identifies Out-of-Domain Compounds

Ruifeng Liu, Anders Wallqvist, A. Wallqvist, 2018, J. Chem. Inf. Model..

General Approach to Estimate Error Bars for Quantitative Structure-Activity Relationship Predictions of Molecular Activity

Ruifeng Liu, Anders Wallqvist, Kyle P Glover, 2018, J. Chem. Inf. Model..

Molecular Structure-Based Large-Scale Prediction of Chemical-Induced Gene Expression Changes

Ruifeng Liu, Anders Wallqvist, Mohamed Diwan M. AbdulHameed, 2017, J. Chem. Inf. Model..

Dissecting Machine-Learning Prediction of Molecular Activity: Is an Applicability Domain Needed for Quantitative Structure-Activity Relationship Models Based on Deep Neural Networks?

Ruifeng Liu, Anders Wallqvist, Hao Wang, 2018, J. Chem. Inf. Model..

Using a Graph Convolutional Neural Network Model to Identify Bile Salt Export Pump Inhibitors

A. Wallqvist, M. AbdulHameed, Ruifeng Liu, 2023, ACS omega.

Advances in functional assays for high-throughput screening of ion channels targets

R. Bostwick, Jay Liu, Ruifeng Liu, 2010, Expert opinion on drug discovery.

General Approach to Estimate Error Bars for Quantitative Structure-Activity Relationship Predictions of Molecular Activity

A. Wallqvist, M. Feasel, Ruifeng Liu, 2018, Journal of Chemical Information and Modeling.

Molecular Similarity-Based Domain Applicability Metric Efficiently Identifies Out-of-Domain Compounds.

A. Wallqvist, Ruifeng Liu, 2018, Journal of chemical information and modeling.

ToxProfiler: Toxicity-target profiler based on chemical similarity

Valmik Desai, Anders Wallqvist, Mohamed Diwan M. AbdulHameed, 2021, Computational Toxicology.

Expression and Characterization of Dog Cytochrome P450 2A13 and 2A25 in Baculovirus Infected Insect Cells

Diansong Zhou, S. Grimm, Catherine L. Booth-Genthe, 2010 .