M. Torchala

发表

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

Raphael A. G. Chaleil, Z. Weng, J. Fernández-Recio, 2015, Journal of molecular biology.

Mean first-passage time calculations: comparison of the deterministic Hill’s algorithm with Monte Carlo simulations

P. Chełminiak, M. Torchala, P. A. Bates, 2012, The European Physical Journal B.

The scoring of poses in protein-protein docking: current capabilities and future directions

Mieczyslaw Torchala, Juan Fernández-Recio, Iain H. Moal, 2013, BMC Bioinformatics.

Output-input ratio in thermally fluctuating biomolecular machines.

Mieczyslaw Torchala, M. Kurzynski, P. Chelminiak, 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

Daisuke Kihara, Keehyoung Joo, Daisuke Kuroda, 2016, Proteins.

Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions

Julie C. Mitchell, Jeffrey J. Gray, Z. Weng, 2013, Proteins.

Enhanced sampling of protein conformational states for dynamic cross‐docking within the protein‐protein docking server SwarmDock

Mieczyslaw Torchala, Paul A Bates, Raphael A G Chaleil, 2019, Proteins.

IRaPPA: information retrieval based integration of biophysical models for protein assembly selection

Zhiping Weng, Mieczyslaw Torchala, Juan Fernández-Recio, 2017, Bioinform..

SwarmDock: a server for flexible protein-protein docking

Mieczyslaw Torchala, Iain H. Moal, Paul A. Bates, 2013, Bioinform..

Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization

Mieczyslaw Torchala, Juan Fernández-Recio, Iain H. Moal, 2013, PLoS Comput. Biol..

RaTrav: a tool for calculating mean first-passage times on biochemical networks

Mieczyslaw Torchala, Paul A. Bates, Michal Kurzynski, 2013, BMC Systems Biology.

The scoring of poses in protein-protein docking: current capabilities and future directions

J. Fernández-Recio, P. Bates, I. Moal, 2013, BMC Bioinformatics.

Why 6-Iodouridine Cannot Be Used as a Radiosensitizer of DNA Damage? Computational and Experimental Studies

W. Kozak, Janusz Rak, Magdalena Zdrowowicz, 2023, The journal of physical chemistry. B.

Mean first-passage time calculations: comparison of the deterministic Hill’s algorithm with Monte Carlo simulations

Paul A. Bates, Przemyslaw Chelminiak, Mieczyslaw Torchala, 2012 .

A Markov‐chain model description of binding funnels to enhance the ranking of docked solutions

Mieczyslaw Torchala, Paul A Bates, Iain H Moal, 2013, Proteins.

Predicting the structure of protein-protein complexes using the SwarmDock Web Server.

Mieczyslaw Torchala, Paul A Bates, P. Bates, 2014, Methods in molecular biology.

A Markov‐chain model description of binding funnels to enhance the ranking of docked solutions

Raphael A. G. Chaleil, P. Bates, R. Agius, 2013, Proteins: Structure, Function, and Bioinformatics.

A Guide for Protein-Protein Docking Using SwarmDock.

Mieczyslaw Torchala, Paul A Bates, Iain H Moal, 2020, Methods in molecular biology.