Matthew DeJongh

发表

CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED

Matthew DeJongh, Benjamin Bockstege, Paul Frybarger, 2012, Bioinform..

Improvements to Bayesian Gene Activity State Estimation from Genome-Wide Transcriptomics Data

Craig Disselkoen, Matthew DeJongh, Nathan Hekman, 2017, bioRxiv.

Gene set analyses for interpreting microarray experiments on prokaryotic organisms

Matthew DeJongh, Aaron A. Best, Nathan L. Tintle, 2008, BMC Bioinformatics.

Evaluating the consistency of gene sets used in the analysis of bacterial gene expression data

Matthew DeJongh, Aaron A. Best, Nathan L. Tintle, 2011, BMC Bioinformatics.

Implementing and Evaluating A Gaussian Mixture Framework for Identifying Gene Function from TnSeq Data

Matthew DeJongh, Aaron A. Best, Nathan L. Tintle, 2019, PSB.

Identification and Analysis of Bacterial Genomic Metabolic Signatures

Matthew DeJongh, Aaron A. Best, Nathan L. Tintle, 2017, PSB.

Toward the automated generation of genome-scale metabolic networks in the SEED

John Gould, Matthew DeJongh, Aaron A. Best, 2007, BMC Bioinformatics.

The DOE Systems Biology Knowledgebase (KBase)

Fangfang Xia, Rick Stevens, Mark Gerstein, 2016, bioRxiv.

Increasing engagement and enrollment in breadth-first introductory courses using authentic computing tasks

Matthew DeJongh, Ryan L. McFall, 2011, SIGCSE '11.

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes

Matthew DeJongh, Nicholas Chia, James G. Jeffryes, 2020, Nucleic Acids Res..

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes

Matthew DeJongh, Nicholas Chia, James G. Jeffryes, 2020, Nucleic Acids Res..

Inference of the Transcriptional Regulatory Network in Staphylococcus aureus by Integration of Experimental and Genomics-Based Evidence

Matthew DeJongh, Aaron A. Best, Pavel S. Novichkov, 2011, Journal of bacteriology.

Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation

Miguel Rocha, Isabel Rocha, Matthew DeJongh, 2016, Front. Microbiol..

Models of Interdisciplinary Research and Service Learning at Hope College

Matthew DeJongh, Aaron A. Best, Christopher C. Barney, 2007 .

Linking Molecular Function and Biological Process Terms in the Gene Ontology

Matthew DeJongh, M. DeJongh, Pamela Van Dort, 2004 .

A Bayesian Framework for the Classification of Microbial Gene Activity States

Craig Disselkoen, Matthew DeJongh, Aaron A. Best, 2016, Front. Microbiol..

High-throughput generation and optimization of genome-scale metabolic models

Matthew DeJongh, Rick L. Stevens, Aaron A. Best, 2009 .