Eric Talevich

发表

Identification and classification of small molecule kinases: insights into substrate recognition and specificity

Andrew F. Neuwald, Krishnadev Oruganty, Natarajan Kannan, 2016, BMC Evolutionary Biology.

Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids

J. Derisi, Maya Kasowski, I. Yeh, 2021, Genome medicine.

A recurrent kinase domain mutation in PRKCA defines chordoid glioma of the third ventricle

D. Brat, D. Louis, M. Rosenblum, 2018, Nature Communications.

The Genetic Evolution of Melanoma from Precursor Lesions.

R. Dummer, C. D'Arrigo, I. Yeh, 2015, The New England journal of medicine.

Activating MET Kinase Rearrangements in Melanoma and Spitz Tumors

I. Yeh, B. Bastian, P. Leboit, 2015, Nature Communications.

Adenomatoid tumors of the male and female genital tract are defined by TRAF7 mutations that drive aberrant NF-kB pathway activation

I. Yeh, C. Onodera, B. Bastian, 2017, Modern Pathology.

Genomic profiling of breast secretory carcinomas reveals distinct genetics from other breast cancers and similarity to mammary analog secretory carcinomas

E. Crawford, I. Yeh, C. Onodera, 2017, Modern Pathology.

Targeted next-generation sequencing of pediatric neuro-oncology patients improves diagnosis, identifies pathogenic germline mutations, and directs targeted therapy

Arie Perry, Tarik Tihan, Iwei Yeh, 2016, Neuro-oncology.

CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing

Eric Talevich, A. Hunter Shain, Thomas Botton, 2016, PLoS Comput. Biol..

Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway

Nam Huh, Iwei Yeh, Eric Talevich, 2015, Nature Genetics.

Targeted next-generation sequencing of pediatric neuro-oncology patients improves diagnosis, identifies pathogenic germline mutations, and directs targeted therapy.

I. Yeh, M. Aboian, C. Onodera, 2016, Neuro-oncology.

CNVkit: Copy number detection and visualization for targeted sequencing using off-target reads

B. Bastian, E. Talevich, A. Shain, 2014, bioRxiv.

Gene Copy Number Estimation from Targeted Next-Generation Sequencing of Prostate Cancer Biopsies: Analytic Validation and Clinical Qualification

A. Chinnaiyan, D. Robinson, R. Ferraldeschi, 2017, Clinical Cancer Research.

Prediction and Prioritization of Rare Oncogenic Mutations in the Cancer Kinome Using Novel Features and Multiple Classifiers

U ManChon, Khaled Rasheed, Natarajan Kannan, 2014, PLoS Comput. Biol..

ProKinO: A Unified Resource for Mining the Cancer Kinome

Susan S. Taylor, N. Kannan, S. Katiyar, 2014, Human mutation.

Genomic profiling of malignant phyllodes tumors reveals aberrations in FGFR1 and PI-3 kinase/RAS signaling pathways and provides insights into intratumoral heterogeneity

I. Yeh, C. Onodera, Yunni-Yi Chen, 2016, Modern Pathology.

Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid.

J. Derisi, M. Shah, M. Wilson, 2021, JAMA neurology.

Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid

J. Derisi, M. Shah, M. Wilson, 2021, medRxiv.

Identification and classification of small molecule kinases: insights into substrate recognition and specificity

A. F. Neuwald, N. Kannan, Krishnadev Oruganty, 2016, BMC Evolutionary Biology.

Genomic profiling of combined hepatocellular‐cholangiocarcinoma reveals similar genetics to hepatocellular carcinoma

S. Kakar, C. Onodera, L. Ferrell, 2019, The Journal of pathology.

Genetic Heterogeneity of BRAF Fusion Kinases in Melanoma Affects Drug Responses.

Robert L. Judson, K. Brown, N. Hayward, 2019, Cell Reports.

Co-Conserved Features Associated with cis Regulation of ErbB Tyrosine Kinases

N. Kannan, Morad Mustafa, A. Mirza, 2010, PloS one.

Genomic Profiling of Malignant Peritoneal Mesothelioma Reveals Recurrent Alterations in Epigenetic Regulatory Genes BAP1, SETD2, and DDX3X

David A. Solomon, Iwei Yeh, Eric Talevich, 2016, Modern Pathology.

The tumor suppressor BAP1 cooperates with BRAFV600E to promote tumor formation in cutaneous melanoma

Z. Modrušan, Matthew T. Chang, V. Dixit, 2018, Pigment cell & melanoma research.

Abstract 2372: The genetic evolution of melanoma

Robert L. Judson, R. Dummer, C. D'Arrigo, 2016 .

CNVkit-RNA: Copy number inference from RNA-Sequencing data

E. Talevich, A. Shain, Eric Talevich, 2018, bioRxiv.

Genomic analysis of early-stage lung cancer reveals a role for TP53 mutations in distant metastasis

Allison P. Heath, Marilyn M. Li, Jena V. Lilly, 2022, Scientific Reports.

Supporting Methods

B. Bastian, A. Shain, T. Botton, 2003 .

The Genetic Evolution of Melanoma from Precursor Lesions.

R. Dummer, C. D'Arrigo, I. Yeh, 2015, The New England journal of medicine.

Supporting Methods

B. Bastian, A. Shain, T. Botton, 2016 .

Targeted next-generation sequencing of pediatric neuro-oncology patients improves diagnosis, identifies pathogenic germline mutations, and directs targeted therapy.

I. Yeh, C. Onodera, N. Butowski, 2016, Neuro-Oncology.